feat!: add starting_assembly as argument when using genomic_to_tx_segment

src/cool_seq_tool/mappers/exon_genomic_coords.py

@@ -778,14 +778,13 @@ async def _genomic_to_tx_segment(
                 )
 
         if genomic_ac:
-            genomic_ac_validation = await self.uta_db.validate_genomic_ac(genomic_ac)
-            if not genomic_ac_validation:
+            grch38_ac = await self.uta_db.get_newest_assembly_ac(genomic_ac)
+            if grch38_ac:
+                genomic_ac = grch38_ac[0]
+            else:
                 return GenomicTxSeg(
                     errors=[f"Genomic accession does not exist in UTA: {genomic_ac}"]
                 )
-            if starting_assembly == Assembly.GRCH37:
-                grch38_ac = await self.uta_db.get_newest_assembly_ac(genomic_ac)
-                genomic_ac = grch38_ac[0]
         else:
             genomic_acs, err_msg = self.seqrepo_access.chromosome_to_acs(chromosome)
 

tests/mappers/test_exon_genomic_coords.py

@@ -1499,13 +1499,13 @@ async def test_invalid(test_egc_mapper):
 
     # Invalid accession
     resp = await test_egc_mapper.genomic_to_tx_segment(
-        genomic_ac="NC_000001.200",
+        genomic_ac="NC_000035.200",
         seg_start_genomic=154191901,
         seg_end_genomic=154192135,
         transcript="NM_152263.3",
     )
     genomic_tx_seg_service_checks(resp, is_valid=False)
-    assert resp.errors == ["Genomic accession does not exist in UTA: NC_000001.200"]
+    assert resp.errors == ["Genomic accession does not exist in UTA: NC_000035.200"]
 
     # Invalid coordinates
     resp = await test_egc_mapper.genomic_to_tx_segment(