feat: add sanitized_url property to parse parse result

pyproject.toml

@@ -33,7 +33,6 @@ dependencies = [
     "ga4gh.vrs >=2.1.3,<3.0",
     "wags-tails ~= 0.4.0",
     "bioutils",
-    "pip",
 ]
 dynamic = ["version"]
 

src/cool_seq_tool/resources/status.py

@@ -3,16 +3,16 @@
 import logging
 from collections import namedtuple
 from pathlib import Path
+from urllib.parse import urlparse
 
 from agct._core import ChainfileError
 from asyncpg import InvalidCatalogNameError, UndefinedTableError
 from biocommons.seqrepo import SeqRepo
-from pip._internal.utils.misc import redact_auth_from_url
 
 from cool_seq_tool.handlers.seqrepo_access import SEQREPO_ROOT_DIR, SeqRepoAccess
 from cool_seq_tool.mappers.liftover import LiftOver
 from cool_seq_tool.resources.data_files import DataFile, get_data_file
-from cool_seq_tool.sources.uta_database import UTA_DB_URL, UtaDatabase
+from cool_seq_tool.sources.uta_database import UTA_DB_URL, ParseResult, UtaDatabase
 
 _logger = logging.getLogger(__name__)
 
@@ -120,9 +120,12 @@ async def check_status(
     else:
         status["liftover"] = True
 
-    sanitized_url = redact_auth_from_url(UTA_DB_URL)
     try:
+        parsed_result = ParseResult(urlparse(db_url))
+        sanitized_url = parsed_result.sanitized_url
         await UtaDatabase.create(db_url)
+    except ValueError:
+        _logger.exception("Database URL is not valid")
     except (OSError, InvalidCatalogNameError, UndefinedTableError):
         _logger.exception(
             "Encountered error instantiating UTA at URI %s", sanitized_url

src/cool_seq_tool/sources/uta_database.py

@@ -5,7 +5,7 @@
 from os import environ
 from typing import Any, Literal, TypeVar
 from urllib.parse import ParseResult as UrlLibParseResult
-from urllib.parse import quote, unquote, urlparse
+from urllib.parse import quote, unquote, urlparse, urlunparse
 
 import asyncpg
 import boto3
@@ -954,3 +954,17 @@ def schema(self) -> str | None:
         """Create schema property."""
         path_elems = self.path.split("/")
         return path_elems[2] if len(path_elems) > 2 else None
+
+    @property
+    def sanitized_url(self) -> str:
+        """Sanitized DB URL with the password masked"""
+        return urlunparse(
+            (
+                self.scheme,
+                self.username,
+                self.hostname,
+                self.port,
+                self.database,
+                self.schema,
+            )
+        )