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Releases: GenomicMedLab/cool-seq-tool

v0.1.0: Merge pull request #90 from GenomicMedLab/staging

01 Jun 20:00
919152d

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  • feat: create fast api service
  • build: Add psycopg2-binary to dev packages
  • fix: genomic to transcript queries for X/Y chromosomes
  • fix: get longest compatible transcript data
  • feat: add endpoint for getting mapped mane data
  • feat: add endpoint for getting mane transcript

v0.0.17: Merge pull request #79 from cancervariants/staging

22 May 21:52
208ba63

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  • Sets PGPASSWORD + UTA_DB_URL for prod env
  • Sets UTA_DB_URL for local env

v0.0.16: Merge pull request #72 from cancervariants/staging

14 Apr 15:21
640078b

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  • Fixes index error when querying a transcript position that does not exist on an exon

v0.0.15: Merge pull request #69 from cancervariants/issue-68

01 Apr 18:58
9168924

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  • Fix bugs in mane transcript

v0.0.14: Merge pull request #64 from cancervariants/issue-62

21 Mar 14:35
6010179

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  • Fixes position bug when using get_mane_transcript on genomic coordinate

v0.0.13: Merge pull request #61 from cancervariants/staging

21 Mar 13:27
85700c3

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  • Update tests for new MANE version
  • Fix some residue / inter-residue bugs

v0.0.12: Merge pull request #57 from cancervariants/staging

06 Dec 19:42
84edd0f

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  • MANE Transcript data returns inter-residue coordinates
  • Add flake8-quotes, flake8-annotations, import-order
  • Move over remaining methods from variation-normalizer
    • chromosome <-> accessions, get transcripts given a genomic position + accession, get mane transcript data from a list of transcripts
  • get_tx_exon_aln_v returns a List

v0.0.10

17 Nov 17:50
3a5bdc4

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v0.0.10 Pre-release
Pre-release
  • Refactor SeqRepoAcess class
  • Provide specific, informative feedback upon failure in SeqRepoAccess

v0.0.9: Merge pull request #45 from cancervariants/staging

09 Nov 14:40
222db78

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  • Fix bug when creating connection args to local db
  • Fix MANE Transcript position bug by adding strand logic

v0.0.8: Merge pull request #42 from cancervariants/staging

04 Nov 00:18
be85fc8

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  • Add gene to error message in get_alt_ac_start_or_end
  • Add error checks for MANE transcript genomic data retrieval
  • Clean up connection to UTA db
  • Create a new connection pool during execute_query when InvalidAuthorizationSpecificationError is raised