Releases: GenomicMedLab/cool-seq-tool
Releases · GenomicMedLab/cool-seq-tool
v0.1.0: Merge pull request #90 from GenomicMedLab/staging
- feat: create fast api service
- build: Add psycopg2-binary to dev packages
- fix: genomic to transcript queries for X/Y chromosomes
- fix: get longest compatible transcript data
- feat: add endpoint for getting mapped mane data
- feat: add endpoint for getting mane transcript
v0.0.17: Merge pull request #79 from cancervariants/staging
- Sets
PGPASSWORD+UTA_DB_URLfor prod env - Sets
UTA_DB_URLfor local env
v0.0.16: Merge pull request #72 from cancervariants/staging
- Fixes index error when querying a transcript position that does not exist on an exon
v0.0.15: Merge pull request #69 from cancervariants/issue-68
- Fix bugs in mane transcript
v0.0.14: Merge pull request #64 from cancervariants/issue-62
- Fixes position bug when using get_mane_transcript on genomic coordinate
v0.0.13: Merge pull request #61 from cancervariants/staging
- Update tests for new MANE version
- Fix some residue / inter-residue bugs
v0.0.12: Merge pull request #57 from cancervariants/staging
- MANE Transcript data returns inter-residue coordinates
- Add flake8-quotes, flake8-annotations, import-order
- Move over remaining methods from variation-normalizer
- chromosome <-> accessions, get transcripts given a genomic position + accession, get mane transcript data from a list of transcripts
- get_tx_exon_aln_v returns a List
v0.0.10
- Refactor SeqRepoAcess class
- Provide specific, informative feedback upon failure in SeqRepoAccess
v0.0.9: Merge pull request #45 from cancervariants/staging
- Fix bug when creating connection args to local db
- Fix MANE Transcript position bug by adding strand logic
v0.0.8: Merge pull request #42 from cancervariants/staging
- Add gene to error message in
get_alt_ac_start_or_end - Add error checks for MANE transcript genomic data retrieval
- Clean up connection to UTA db
- Create a new connection pool during
execute_querywhenInvalidAuthorizationSpecificationErroris raised