Fix bugs in writeBambuOutput. #501

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SuiYue-2308 wants to merge 2 commits intoMultiplex_Major_Patchfrom

Multiplex_Fix_incompatibleCounts

Commits on Jun 27, 2025

Fix the bugs in writeBambuOutput. Correct the order of incompatibleCounts.mtx to match to gene.tsv.
SuiYue-2308
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Commits on Dec 12, 2025

fix: align GENEID order for transcriptToGeneExpression(se) and metadata(se)$incompatibleCounts
lingminhao
committed