exposome-demo

Chemical exposome pipeline with a sample dataset.

• The docker contains the necessary dependencies. These dependencies can be run directly as CLI commands (without the RUN parameter) in the RStudio Environemtn inside the Hopsworks R project. If you want install via docker directly run the dockerfile inside docker folder to create the docker image.
• scripts folder contain the R scripts of the pipeline. Upload to the it to the Rstudio dataset or inside the Rstudio session.
• output directory shows a sample outdata data and HTML report. This should be created after the R scripts are run succesfully.

Credits: Xiangping Lin xiangping.lin@stanford.edu; Allison Zhang zhangxy@stanford.edu