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Releases: HautaniemiLab/histolytics

v0.2.5

30 Jan 10:42

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[0.2.5] - 2026-01-30

Fixed

  • Fix empty gdf bug in fiber_feats and dtype nug in inst2gdf.

v0.2.4

14 Nov 10:48

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[0.2.4] - 2025-11-14

Feat

  • Add WSIPatchIterator

v0.2.3

21 Oct 16:10

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[0.2.3] - 2025-10-21

Fixed

  • Fix index error bug in get_objs
  • Other minor bug fixes

v0.2.2

26 Aug 12:45

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[0.2.2] - 2025-08-26

Fixed

  • Fix bug in collate_fn for WSIGridProcessor

Added

  • WSI workflow tutorials

v0.2.1

18 Aug 12:49

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[0.2.1] - 2025-08-18

Fixed

  • Reduced package size by compressing data
  • Fixed PyPI publishing issues

v0.2.0

18 Aug 12:40

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[0.2.0] - 2025-08-18

Added

  • Unify feature extraction API
  • Major performance improvements for functions in stromal_feats and nuc_feats modules
  • Add textural_feats for GLCM feature extraction. Uses skimage.
  • Add manders_coloc_coeff, n_chrom_clumps and chrom_boundary_prop feats to chromatin_feats
  • Update documentation pages

v.0.1.1

03 Jul 17:05

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[0.1.1] - 2025-07-03

Added

  • Added legendgram utility for creating histogram legends from GeoDataFrames
  • Added metrics module for segmentation benchmarking
  • Added ripley_test, local_autocorr, global_autocorr functions.
  • Improved documentation

v0.1.0

10 Jun 16:51

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[0.1.0] - 2024-05-28

Added

  • Initial release of Histolytics
  • WSI-level panoptic segmentation capabilities
  • Support for multiple panoptic segmentation models: HoVer-Net, Cellpose, Stardist, CellVit-SAM, CPP-Net
  • Pre-trained models in model-hub
  • Spatial analysis tools for segmented WSIs
  • Documentation with quick start guides and API reference