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Ovrl.py is a quality-control tool for spatial transcriptomics data that can help analysts find sources of vertical signal inconsistency in their data.
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It is works with imaging-based spatial transcriptomics data, such as 10x genomics' Xenium or vizgen's MERSCOE platforms.
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It is works with imaging-based spatial transcriptomics data, such as 10x genomics' Xenium or vizgen's MERSCOPE platforms.
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The main feature of the tool is the production of 'signal integrity maps' that can help analysts identify sources of signal inconsistency in their data.
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Users can also use the built-in 3D visualisation tool to explore regions of signal inconsistency in their data on a molecular level.
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