Use uv

.github/workflows/test.yaml

@@ -22,16 +22,15 @@ jobs:
 
     steps:
     - uses: actions/checkout@v3
-    - name: Setup conda
-      uses: conda-incubator/setup-miniconda@v3
-      with:
-        auto-update-conda: true
-        python-version: ${{ matrix.python-version }}
-        environment-file: conda-env.yml
-        channels: conda-forge
-    - name: Install pytest
-      run: |
-        conda install pytest --yes
+
+    - name: Install uv
+      uses: astral-sh/setup-uv@v2
+
+    - name: Set up Python ${{ matrix.python-version }}
+      run: uv python install ${{ matrix.python-version }}
+
+    - name: Install the project
+      run: uv sync --dev
+
     - name: Run tests
-      run: |
-        python -m pytest
+      run: uv run pytest

.gitignore

@@ -161,3 +161,6 @@ cython_debug/
 
 # macOS
 .DS_Store
+
+# uv
+uv.lock

.python-version

@@ -0,0 +1 @@
+3.12

README.md

@@ -11,8 +11,10 @@ Once you have a terminal (or "Anaconda prompt" on Windows) open after installati
 1. Change to a directory where you want to download this code.
 2. `git clone https://github.com/HiPCTProject/rebin`
 3. `cd rebin`
-4. `conda env create -f conda-env.yml`
+4. `conda env create --name rebin`
 5. `conda activate rebin`
+6. `conda install uv`
+7. `uv sync`
 
 Now you should be able to run the rebinning code using the example below.
 

pyproject.toml

@@ -1,12 +1,19 @@
-[tool.mypy]
-ignore_missing_imports = true
-no_implicit_optional = false
+[project]
+name = "rebin"
+version = "0.1.0"
+description = "Re-bin JPEG2000 images"
+readme = "README.md"
+requires-python = ">=3.9"
+dependencies = [
+    "click",
+    "dask",
+    "glymur",
+    "joblib",
+    "numpy",
+    "scikit-image",
+]
 
-[tool.ruff]
-fix = true
-force-exclude = true
-select = [
-    "F401", # Remove unused imports
-    "I", # Sort imports
-    "UP", # Update Python syntax
+[tool.uv]
+dev-dependencies = [
+    "pytest",
 ]