add queuepenalty

.github/workflows/CI.yml

@@ -1,77 +1,77 @@
-name: CI
-on:
-  push:
-    branches:
-      - main
-    tags: ['*']
-  pull_request:
-  workflow_dispatch:
-concurrency:
-  # Skip intermediate builds: always.
-  # Cancel intermediate builds: only if it is a pull request build.
-  group: ${{ github.workflow }}-${{ github.ref }}
-  cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
-jobs:
-  test:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
-    runs-on: ${{ matrix.os }}
-    timeout-minutes: 60
-    permissions: # needed to allow julia-actions/cache to proactively delete old caches that it has created
-      actions: write
-      contents: read
-    strategy:
-      fail-fast: false
-      matrix:
-        version:
-          - '1.10'
-          - '1'
-        os:
-          - ubuntu-latest
-        arch:
-          - x64
-    steps:
-      - uses: actions/checkout@v4
-      - uses: julia-actions/setup-julia@v2
-        with:
-          version: ${{ matrix.version }}
-          arch: ${{ matrix.arch }}
-      - uses: julia-actions/cache@v2
-      - uses: julia-actions/julia-buildpkg@v1
-      - uses: julia-actions/julia-runtest@v1
-      - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v5
-        with:
-          files: lcov.info
-          token: ${{ secrets.CODECOV_TOKEN }}
-          fail_ci_if_error: false
-  # docs:
-  #   name: Documentation
-  #   runs-on: ubuntu-latest
-  #   permissions:
-  #     actions: write # needed to allow julia-actions/cache to proactively delete old caches that it has created
-  #     contents: write
-  #     statuses: write
-  #   steps:
-  #     - uses: actions/checkout@v4
-  #     - uses: julia-actions/setup-julia@v2
-  #       with:
-  #         version: '1'
-  #     - uses: julia-actions/cache@v2
-  #     - name: Configure doc environment
-  #       shell: julia --project=docs --color=yes {0}
-  #       run: |
-  #         using Pkg
-  #         Pkg.develop(PackageSpec(path=pwd()))
-  #         Pkg.instantiate()
-  #     - uses: julia-actions/julia-buildpkg@v1
-  #     - uses: julia-actions/julia-docdeploy@v1
-  #       env:
-  #         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-  #         DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
-  #     - name: Run doctests
-  #       shell: julia --project=docs --color=yes {0}
-  #       run: |
-  #         using Documenter: DocMeta, doctest
-  #         using NMFMerge
-  #         DocMeta.setdocmeta!(NMFMerge, :DocTestSetup, :(using NMFMerge); recursive=true)
-  #         doctest(NMFMerge)
+name: CI
+on:
+  push:
+    branches:
+      - main
+    tags: ['*']
+  pull_request:
+  workflow_dispatch:
+concurrency:
+  # Skip intermediate builds: always.
+  # Cancel intermediate builds: only if it is a pull request build.
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    runs-on: ${{ matrix.os }}
+    timeout-minutes: 60
+    permissions: # needed to allow julia-actions/cache to proactively delete old caches that it has created
+      actions: write
+      contents: read
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - '1.10'
+          - '1'
+        os:
+          - ubuntu-latest
+        arch:
+          - x64
+    steps:
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: julia-actions/cache@v2
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v5
+        with:
+          files: lcov.info
+          token: ${{ secrets.CODECOV_TOKEN }}
+          fail_ci_if_error: false
+  # docs:
+  #   name: Documentation
+  #   runs-on: ubuntu-latest
+  #   permissions:
+  #     actions: write # needed to allow julia-actions/cache to proactively delete old caches that it has created
+  #     contents: write
+  #     statuses: write
+  #   steps:
+  #     - uses: actions/checkout@v4
+  #     - uses: julia-actions/setup-julia@v2
+  #       with:
+  #         version: '1'
+  #     - uses: julia-actions/cache@v2
+  #     - name: Configure doc environment
+  #       shell: julia --project=docs --color=yes {0}
+  #       run: |
+  #         using Pkg
+  #         Pkg.develop(PackageSpec(path=pwd()))
+  #         Pkg.instantiate()
+  #     - uses: julia-actions/julia-buildpkg@v1
+  #     - uses: julia-actions/julia-docdeploy@v1
+  #       env:
+  #         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  #         DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
+  #     - name: Run doctests
+  #       shell: julia --project=docs --color=yes {0}
+  #       run: |
+  #         using Documenter: DocMeta, doctest
+  #         using NMFMerge
+  #         DocMeta.setdocmeta!(NMFMerge, :DocTestSetup, :(using NMFMerge); recursive=true)
+  #         doctest(NMFMerge)

.github/workflows/CompatHelper.yml

@@ -1,16 +1,16 @@
-name: CompatHelper
-on:
-  schedule:
-    - cron: '0 0 * * 0'
-  workflow_dispatch:
-jobs:
-  CompatHelper:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Pkg.add("CompatHelper")
-        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
-      - name: CompatHelper.main()
-        env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
-        run: julia -e 'using CompatHelper; CompatHelper.main()'
+name: CompatHelper
+on:
+  schedule:
+    - cron: '0 0 * * 0'
+  workflow_dispatch:
+jobs:
+  CompatHelper:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Pkg.add("CompatHelper")
+        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
+      - name: CompatHelper.main()
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
+        run: julia -e 'using CompatHelper; CompatHelper.main()'

Project.toml

@@ -1,29 +1,29 @@
-name = "NMFMerge"
-uuid = "9cc52eda-dfaf-4e21-aae3-9f26bed153a3"
-authors = ["youdongguo <1010705897@qq.com> and contributors"]
-version = "1.0.1"
-
-[deps]
-DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
-GsvdInitialization = "2ac24108-be9c-42b8-8d78-6a4f62a87e7d"
-LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-NMF = "6ef6ca0d-6ad7-5ff6-b225-e928bfa0a386"
-TSVD = "9449cd9e-2762-5aa3-a617-5413e99d722e"
-
-[compat]
-DataStructures = "0.18, 0.19"
-ForwardDiff = "0.10"
-GsvdInitialization = "1"
-LinearAlgebra = "1"
-NMF = "1"
-TSVD = "0.4"
-Test = "1"
-julia = "1.10"
-
-[extras]
-ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
-NMF = "6ef6ca0d-6ad7-5ff6-b225-e928bfa0a386"
-Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-
-[targets]
-test = ["ForwardDiff", "NMF", "Test"]
+name = "NMFMerge"
+uuid = "9cc52eda-dfaf-4e21-aae3-9f26bed153a3"
+authors = ["youdongguo <1010705897@qq.com> and contributors"]
+version = "1.1.0"
+
+[deps]
+DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
+GsvdInitialization = "2ac24108-be9c-42b8-8d78-6a4f62a87e7d"
+LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
+NMF = "6ef6ca0d-6ad7-5ff6-b225-e928bfa0a386"
+TSVD = "9449cd9e-2762-5aa3-a617-5413e99d722e"
+
+[compat]
+DataStructures = "0.18"
+ForwardDiff = "0.10"
+GsvdInitialization = "1"
+LinearAlgebra = "1"
+NMF = "1"
+TSVD = "0.4"
+Test = "1"
+julia = "1.10"
+
+[extras]
+ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
+NMF = "6ef6ca0d-6ad7-5ff6-b225-e928bfa0a386"
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["ForwardDiff", "NMF", "Test"]