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[Snyk] Security upgrade urllib3 from 1.25.11 to 1.26.19 - #116

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[Snyk] Security upgrade urllib3 from 1.25.11 to 1.26.19#116
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This PR was automatically created by Snyk using the credentials of a real user.


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Snyk has created this PR to fix 1 vulnerabilities in the pip dependencies of this project.

Snyk changed the following file(s):

  • requirements.txt
⚠️ Warning ``` s3transfer 0.8.2 has requirement botocore<2.0a.0,>=1.33.2, but you have botocore 1.12.208. requests 2.20.0 has requirement urllib3<1.25,>=1.21.1, but you have urllib3 2.0.7. hca 6.5.1 has requirement jsonschema<3,>=2.6, but you have jsonschema 4.17.3. hca 6.5.1 has requirement dcplib<3,>=2.0.2, but you have dcplib 3.12.0. google-auth-oauthlib 1.2.0 has requirement google-auth>=2.15.0, but you have google-auth 1.35.0. google-api-core 2.19.0 has requirement google-auth<3.0.dev0,>=2.14.1, but you have google-auth 1.35.0. Flask 2.2.5 has requirement Jinja2>=3.0, but you have Jinja2 2.11.3. dcplib 3.12.0 has requirement termcolor<2,>=1.1.0, but you have termcolor 2.3.0. botocore 1.12.208 has requirement jmespath<1.0.0,>=0.7.1, but you have jmespath 1.0.1. botocore 1.12.208 has requirement urllib3<1.26,>=1.20; python_version >= "3.4", but you have urllib3 2.0.7. boto3 1.33.13 has requirement botocore<1.34.0,>=1.33.13, but you have botocore 1.12.208. argcomplete 1.12.3 has requirement importlib-metadata<5,>=0.23; python_version == "3.7", but you have importlib-metadata 6.7.0.
</details>





---

> [!IMPORTANT]
>
> - Check the changes in this PR to ensure they won't cause issues with your project.
> - Max score is 1000. Note that the real score may have changed since the PR was raised.
> - This PR was automatically created by Snyk using the credentials of a real user.
> - Some vulnerabilities couldn't be fully fixed and so Snyk will still find them when the project is tested again. This may be because the vulnerability existed within more than one direct dependency, but not all of the affected dependencies could be upgraded.

---

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[//]: # 'snyk:metadata:{"customTemplate":{"variablesUsed":[],"fieldsUsed":[]},"dependencies":[{"name":"urllib3","from":"1.25.11","to":"1.26.19"}],"env":"prod","issuesToFix":[{"exploit_maturity":"No Known Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known 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Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known 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Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known Exploit","id":"SNYK-PYTHON-URLLIB3-7267250","priority_score":586,"priority_score_factors":[{"type":"freshness","label":true,"score":71},{"type":"fixability","label":true,"score":214},{"type":"cvssScore","label":"6","score":300},{"type":"scoreVersion","label":"v1","score":1}],"severity":"medium","title":"Improper Removal of Sensitive Information Before Storage or Transfer"},{"exploit_maturity":"No Known 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Transfer"}],"prId":"54a9c55a-c2dd-4314-92dc-6efc31286388","prPublicId":"54a9c55a-c2dd-4314-92dc-6efc31286388","packageManager":"pip","priorityScoreList":[586],"projectPublicId":"bae6750a-1c90-43f6-a860-4652f2409304","projectUrl":"https://app.snyk.io/org/humancellatlas/project/bae6750a-1c90-43f6-a860-4652f2409304?utm_source=github&utm_medium=referral&page=fix-pr","prType":"fix","templateFieldSources":{"branchName":"default","commitMessage":"default","description":"default","title":"default"},"templateVariants":["updated-fix-title","pr-warning-shown","priorityScore"],"type":"auto","upgrade":[],"vulns":["SNYK-PYTHON-URLLIB3-7267250"],"patch":[],"isBreakingChange":false,"remediationStrategy":"vuln"}'

The following vulnerabilities are fixed by pinning transitive dependencies:
- https://snyk.io/vuln/SNYK-PYTHON-URLLIB3-7267250
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