rebuild

Author: cmungall

ontologies.Makefile

@@ -152,6 +152,17 @@ db/bcio.owl: download/bcio.owl
 	cp $< $@
 
 
+download/oeo.owl: STAMP
+	curl -L -s http://openenergy-platform.org/ontology/oeo/ > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/oeo.owl
+
+db/oeo.owl: download/oeo.owl
+	cp $< $@
+
+
 download/go.owl: STAMP
 	curl -L -s http://purl.obolibrary.org/obo/go/extensions/go-plus.owl > $@.tmp
 	sha256sum -b $@.tmp > $@.sha256
@@ -383,6 +394,17 @@ db/co_324.owl: download/co_324.owl
 	cp $< $@
 
 
+download/interpro.owl: STAMP
+	curl -L -s https://w3id.org/biopragmatics/resources/interpro/92.0/interpro.obo > $@.tmp
+	sha256sum -b $@.tmp > $@.sha256
+	mv $@.tmp $@
+
+.PRECIOUS: download/interpro.owl
+
+db/interpro.owl: download/interpro.owl
+	robot merge -i $< -o $@
+
+
 download/hgnc.genegroup.owl: STAMP
 	curl -L -s https://github.com/biopragmatics/obo-db-ingest/raw/main/export/hgnc.genegroup/hgnc.genegroup.owl.gz | gzip -dc > $@.tmp
 	sha256sum -b $@.tmp > $@.sha256
@@ -525,4 +547,4 @@ download/%.owl: STAMP
 db/%.owl: download/%.owl
 	robot merge -i $< -o $@
 
-EXTRA_ONTOLOGIES = chiro ncit fma maxo foodon chebiplus msio modl phenio comploinc bero aio reacto bcio go go-lego bao orcid cpont biolink biopax enanomapper mlo ito reactome-Homo-sapiens efo hcao edam sweetAll lov schema-dot-org cellosaurus cosmo dbpendiaont co_324 hgnc.genegroup hgnc dictybase eccode uniprot rhea swisslipid drugbank drugcentral complexportal drugmechdb rxnorm
+EXTRA_ONTOLOGIES = chiro ncit fma maxo foodon chebiplus msio modl phenio comploinc bero aio reacto bcio oeo go go-lego bao orcid cpont biolink biopax enanomapper mlo ito reactome-Homo-sapiens efo hcao edam sweetAll lov schema-dot-org cellosaurus cosmo dbpendiaont co_324 interpro hgnc.genegroup hgnc dictybase eccode uniprot rhea swisslipid drugbank drugcentral complexportal drugmechdb rxnorm

src/semsql/builder/prefixes/prefixes.csv

@@ -58,6 +58,7 @@ modl,https://archive.org/services/purl/purl/modular_ontology_design_library#
 biolink,https://w3id.org/biolink/vocab/
 loinc,https://loinc.org/
 BCIO,http://humanbehaviourchange.org/ontology/BCIO_
+OEO,http://openenergy-platform.org/ontology/oeo/OEO_
 orcid,https://orcid.org/
 evs.ncit,http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#
 old.fix,http://purl.org/obo/owl/FIX#

src/semsql/builder/prefixes/prefixes_local.csv

@@ -6,13 +6,15 @@ modl,https://archive.org/services/purl/purl/modular_ontology_design_library#
 biolink,https://w3id.org/biolink/vocab/
 loinc,https://loinc.org/
 BCIO,http://humanbehaviourchange.org/ontology/BCIO_
+OEO,http://openenergy-platform.org/ontology/oeo/OEO_
 orcid,https://orcid.org/
 evs.ncit,http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#
 old.fix,http://purl.org/obo/owl/FIX#
 mlo,http://www.a2rd.net.br/mlo#
 dbpediaont,http://dbpedia.org/ontology/
 dbpedia,http://dbpedia.org/
 co_324,https://cropontology.org/rdf/CO_324:
+InterPro,http://purl.obolibrary.org/obo/interpro_
 hgnc.genegroup,http://purl.obolibrary.org/obo/hgnc.genegroup_
 hgnc,http://purl.obolibrary.org/obo/hgnc_
 hgnc.genegroup,http://purl.obolibrary.org/obo/dictybase_

src/semsql/builder/registry/ontologies.yaml

@@ -58,6 +58,10 @@ ontologies:
     url: http://humanbehaviourchange.org/ontology/bcio.owl
     prefixmap:
       BCIO: http://humanbehaviourchange.org/ontology/BCIO_
+  oeo:
+    url: http://openenergy-platform.org/ontology/oeo/
+    prefixmap:
+      OEO: http://openenergy-platform.org/ontology/oeo/OEO_
   go:
     url: http://purl.obolibrary.org/obo/go/extensions/go-plus.owl
   go-lego:
@@ -91,7 +95,7 @@ ontologies:
       mlo: http://www.a2rd.net.br/mlo#
   ito:
     url: https://github.com/OpenBioLink/ITO/raw/master/ITO.owl.zip
-    zip_extract_file: ITO.owl
+    zip_extract_file: ITO.owl      
   reactome-Homo-sapiens:
     url: https://reactome.org/download/current/biopax.zip
     zip_extract_file: Homo_sapiens.owl
@@ -141,6 +145,11 @@ ontologies:
 
 ## PyOBO products      
 ## See https://github.com/INCATools/semantic-sql/issues/45
+  interpro:
+    url: https://w3id.org/biopragmatics/resources/interpro/92.0/interpro.obo
+    format: obo
+    prefixmap:
+      InterPro: http://purl.obolibrary.org/obo/interpro_
   hgnc.genegroup:
     url: https://github.com/biopragmatics/obo-db-ingest/raw/main/export/hgnc.genegroup/hgnc.genegroup.owl.gz
     compression: gzip