Kubernetes: add deny all global network policy

charts/.gitignore

@@ -2,3 +2,5 @@ values.yaml
 values.*.yaml
 k8s_hosts.ini
 helmfile.y?ml
+
+*.tgz

charts/adminer/templates/networkpolicy.yaml

@@ -0,0 +1,20 @@
+apiVersion: projectcalico.org/v3
+kind: NetworkPolicy
+metadata:
+  name: adminer-network-policy
+  labels:
+    {{- include "adminer.labels" . | nindent 4 }}
+spec:
+  selector: app.kubernetes.io/instance == "{{ .Release.Name }}"
+  ingress:
+    - action: Allow
+      protocol: TCP
+      destination:
+        ports:
+          - {{ .Values.service.port }}
+  egress:
+    - action: Allow
+      protocol: TCP
+      destination:
+        ports:
+          - 5432

charts/calico-configuration/.helmignore

@@ -0,0 +1,23 @@
+# Patterns to ignore when building packages.
+# This supports shell glob matching, relative path matching, and
+# negation (prefixed with !). Only one pattern per line.
+.DS_Store
+# Common VCS dirs
+.git/
+.gitignore
+.bzr/
+.bzrignore
+.hg/
+.hgignore
+.svn/
+# Common backup files
+*.swp
+*.bak
+*.tmp
+*.orig
+*~
+# Various IDEs
+.project
+.idea/
+*.tmproj
+.vscode/

charts/calico-configuration/Chart.yaml

@@ -0,0 +1,24 @@
+apiVersion: v2
+name: calico-configuration
+description: A Helm chart for Kubernetes
+
+# A chart can be either an 'application' or a 'library' chart.
+#
+# Application charts are a collection of templates that can be packaged into versioned archives
+# to be deployed.
+#
+# Library charts provide useful utilities or functions for the chart developer. They're included as
+# a dependency of application charts to inject those utilities and functions into the rendering
+# pipeline. Library charts do not define any templates and therefore cannot be deployed.
+type: application
+
+# This is the chart version. This version number should be incremented each time you make changes
+# to the chart and its templates, including the app version.
+# Versions are expected to follow Semantic Versioning (https://semver.org/)
+version: 0.0.1
+
+# This is the version number of the application being deployed. This version number should be
+# incremented each time you make changes to the application. Versions are not expected to
+# follow Semantic Versioning. They should reflect the version the application is using.
+# It is recommended to use it with quotes.
+appVersion: "3.26.4"

charts/calico-configuration/README.md

@@ -0,0 +1,19 @@
+## How to add network policy (local deployment)
+
+How to discover ports / networks that are used by application
+* enable and observe traffic via
+  - https://docs.tigera.io/calico/3.30/observability/enable-whisker
+  - https://docs.tigera.io/calico/3.30/observability/view-flow-logs
+* add staged policies to make sure all cases are included https://docs.tigera.io/calico/3.30/network-policy/staged-network-policies
+* transform staged policies to "normal" policies
+
+## Debug network policies
+* observe traffic and check `policies` field in whisker logs
+  - https://docs.tigera.io/calico/3.30/observability/enable-whisker
+  - https://docs.tigera.io/calico/3.30/observability/view-flow-logs
+
+Warning: make sure that calico version being used support Whisker (first introduced in v3.30)
+
+## Known issues
+
+If network policy is created after pod, pod **MUST** be restarted for policy to take effect. Read more https://github.com/projectcalico/calico/issues/10753#issuecomment-3140717418

charts/calico-configuration/templates/NOTES.txt

@@ -0,0 +1,3 @@
+This chart configures Calico but does not deploy Calico itself. Calico is deployed during the Kubernetes cluster creation.
+
+Note: to make sure network policies are applied correctly, you may need to restart targeted application pods.

charts/calico-configuration/templates/globalpolicy.yaml

@@ -0,0 +1,30 @@
+# Source: https://docs.tigera.io/calico/3.30/network-policy/get-started/kubernetes-default-deny
+apiVersion: projectcalico.org/v3
+kind: GlobalNetworkPolicy
+metadata:
+  name: default-global-deny-network-policy
+spec:
+  # "kube-public", "kube-system", "kube-node-lease" -- system namespaces
+  # "calico-system", "calico-apiserver", "tigera-operator" -- calico namespaces (when installed via scripts [local deployment])
+  # TODO: other namespaces are to be removed from this list (once appropriate network policies are created)
+  namespaceSelector:
+    kubernetes.io/metadata.name not in {"kube-public", "kube-system", "kube-node-lease", "calico-system", "calico-apiserver", "tigera-operator", "simcore", "cert-manager", "reflector", "traefik", "victoria-logs", "csi-s3", "portainer", "topolvm", "local-path-storage", "longhorn"}
+  types:
+    - Ingress
+    - Egress
+  egress:
+    # allow all namespaces to communicate to DNS pods
+    # this will also apply to pods that have network policy defined
+    # so that we don't need to define DNS policy for each pod
+    - action: Allow
+      protocol: UDP
+      destination:
+        selector: 'k8s-app == "kube-dns"'
+        ports:
+          - 53
+    - action: Allow
+      protocol: TCP
+      destination:
+        selector: 'k8s-app == "kube-dns"'
+        ports:
+          - 53

charts/portainer/Chart.lock

@@ -0,0 +1,6 @@
+dependencies:
+- name: portainer
+  repository: https://portainer.github.io/k8s/
+  version: 1.0.54
+digest: sha256:bafe4182881aee8c6df3d3c6f8c523a1bd7577bed04942ad3d9b857a5437d96f
+generated: "2025-07-29T11:07:15.39037387+02:00"

charts/portainer/Chart.yaml

@@ -0,0 +1,29 @@
+apiVersion: v2
+name: portainer
+description: A Helm chart for Kubernetes
+
+# A chart can be either an 'application' or a 'library' chart.
+#
+# Application charts are a collection of templates that can be packaged into versioned archives
+# to be deployed.
+#
+# Library charts provide useful utilities or functions for the chart developer. They're included as
+# a dependency of application charts to inject those utilities and functions into the rendering
+# pipeline. Library charts do not define any templates and therefore cannot be deployed.
+type: application
+
+# This is the chart version. This version number should be incremented each time you make changes
+# to the chart and its templates, including the app version.
+# Versions are expected to follow Semantic Versioning (https://semver.org/)
+version: 1.0.54
+
+# This is the version number of the application being deployed. This version number should be
+# incremented each time you make changes to the application. Versions are not expected to
+# follow Semantic Versioning. They should reflect the version the application is using.
+# It is recommended to use it with quotes.
+appVersion: 2.21.2
+
+dependencies:
+  - name: portainer
+    version: 1.0.54
+    repository: "https://portainer.github.io/k8s/"

charts/portainer/templates/NOTES.txt

@@ -0,0 +1 @@
+Wrapper around portainer helm chart https://github.com/portainer/k8s

charts/portainer/templates/networkpolicy.yaml

@@ -0,0 +1,36 @@
+apiVersion: projectcalico.org/v3
+kind: NetworkPolicy
+metadata:
+  name: portainer-network-policy
+spec:
+  selector: app.kubernetes.io/instance == "portainer"
+  types:
+  - Ingress
+  - Egress
+  egress:
+    - action: Allow
+      protocol: TCP
+      # connect to the Kubernetes API server
+      destination:
+        ports:
+          - 6443
+        nets:
+          - 10.0.0.0/8
+          - 172.16.0.0/12
+          - 192.168.0.0/16
+    # coredns 53 allow from kube system
+    - action: Allow
+      protocol: UDP
+      destination:
+        # `selector: 'k8s-app == "kube-dns"'` does not work (so global policy default dns allow does not work)
+        # manually allow dns and use different selector that works.
+        selectorNamespace: kubernetes.io/metadata.name == "kube-system"
+        ports:
+          - 53
+  ingress:
+    - action: Allow
+      # allow traffic to portainer GUI
+      protocol: TCP
+      destination:
+        ports:
+          - {{ .Values.servicePort }}

charts/portainer/values.ebs-pv.yaml.gotmpl

@@ -1,4 +1,5 @@
-persistence:
-  enabled: true
-  size: "1Gi"  # minimal size for gp3 is 1Gi
-  storageClass: "{{ .Values.ebsStorageClassName }}"
+portainer:
+  persistence:
+    enabled: true
+    size: "1Gi"  # minimal size for gp3 is 1Gi
+    storageClass: "{{ .Values.ebsStorageClassName }}"

charts/portainer/values.longhorn-pv.yaml.gotmpl

@@ -1,4 +1,5 @@
-persistence:
-  enabled: true
-  size: "300Mi" # cannot be lower https://github.com/longhorn/longhorn/issues/8488
-  storageClass: "{{ .Values.longhornStorageClassName }}"
+portainer:
+  persistence:
+    enabled: true
+    size: "300Mi" # cannot be lower https://github.com/longhorn/longhorn/issues/8488
+    storageClass: "{{ .Values.longhornStorageClassName }}"

charts/portainer/values.s3-pv.yaml.gotmpl

@@ -1,4 +1,5 @@
-persistence:
-  enabled: true
-  size: "1Gi"
-  storageClass: "csi-s3"
+portainer:
+  persistence:
+    enabled: true
+    size: "1Gi"
+    storageClass: "csi-s3"

charts/portainer/values.yaml.gotmpl

@@ -1,69 +1,68 @@
-# Default values for adminer.
-# This is a YAML-formatted file.
-# Declare variables to be passed into your templates.
+servicePort: &servicePort 9000
 
-replicaCount: 1
+portainer:
+  replicaCount: 1
 
-image:
-  repository: portainer/portainer-ce
-  pullPolicy: IfNotPresent
+  image:
+    repository: portainer/portainer-ce
+    pullPolicy: IfNotPresent
 
-imagePullSecrets: []
-nameOverride: ""
-fullnameOverride: ""
+  imagePullSecrets: []
+  nameOverride: ""
+  fullnameOverride: ""
 
-serviceAccount:
-  # Annotations to add to the service account
-  annotations: {}
-  # The name of the service account to use.
-  # If not set and create is true, a name is generated using the fullname template
-  name: portainer-sa-clusteradmin
+  serviceAccount:
+    # Annotations to add to the service account
+    annotations: {}
+    # The name of the service account to use.
+    # If not set and create is true, a name is generated using the fullname template
+    name: portainer-sa-clusteradmin
 
-persistence: {}
+  persistence: {}
 
-podAnnotations: {}
-podLabels: {}
+  podAnnotations: {}
+  podLabels: {}
 
-podSecurityContext:
-  {}
+  podSecurityContext:
+    {}
 
-securityContext:
-  {}
+  securityContext:
+    {}
 
-service:
-  type: "ClusterIP"
-  port: 9000
+  service:
+    type: "ClusterIP"
+    port: *servicePort
 
-ingress:
-  enabled: true
-  className: ""
-  annotations:
-    namespace: {{ .Release.Namespace }}
-    cert-manager.io/cluster-issuer: "cert-issuer"
-    traefik.ingress.kubernetes.io/router.entrypoints: websecure
-    traefik.ingress.kubernetes.io/router.middlewares: traefik-traefik-basic-auth@kubernetescrd,traefik-portainer-strip-prefix@kubernetescrd  # namespace + middleware name
-  tls:
-    - hosts:
-        - {{ requiredEnv "K8S_MONITORING_FQDN" }}
-      secretName: monitoring-tls
-  hosts:
-    - host: {{ requiredEnv "K8S_MONITORING_FQDN" }}
-      paths:
-        - path: /portainer
-          pathType: Prefix
-          backend:
-            service:
-              name: portainer
-              port:
-                number: 9000
+  ingress:
+    enabled: true
+    className: ""
+    annotations:
+      namespace: {{ .Release.Namespace }}
+      cert-manager.io/cluster-issuer: "cert-issuer"
+      traefik.ingress.kubernetes.io/router.entrypoints: websecure
+      traefik.ingress.kubernetes.io/router.middlewares: traefik-traefik-basic-auth@kubernetescrd,traefik-portainer-strip-prefix@kubernetescrd  # namespace + middleware name
+    tls:
+      - hosts:
+          - {{ requiredEnv "K8S_MONITORING_FQDN" }}
+        secretName: monitoring-tls
+    hosts:
+      - host: {{ requiredEnv "K8S_MONITORING_FQDN" }}
+        paths:
+          - path: /portainer
+            pathType: Prefix
+            backend:
+              service:
+                name: portainer
+                port:
+                  number: *servicePort
 
-resources:
-  limits:
-    cpu: 2
-    memory: 1024Mi
-  requests:
-    cpu: 0.1
-    memory: 128Mi
+  resources:
+    limits:
+      cpu: 2
+      memory: 1024Mi
+    requests:
+      cpu: 0.1
+      memory: 128Mi
 
-nodeSelector:
-  ops: "true"
+  nodeSelector:
+    ops: "true"