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Added tabix indexing of variants.vcf.gz file #70

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Added tabix indexing of variants.vcf.gz file #70

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1 change: 1 addition & 0 deletions src/python/bin/multigrmpy.py
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Original file line number Diff line number Diff line change
Expand Up @@ -57,6 +57,7 @@ def load_graph_description(args):
for record in [record for record_block in records for record in record_block]:
vcf_with_event_ids_file.write(record)

pysam.tabix_index(vcf_with_event_ids_path, preset="vcf", force=True)
logging.info("Saving: %s.", converted_json_path)
with gzip.open(converted_json_path, "wt") as converted_json_file:
json.dump(event_list, converted_json_file, sort_keys=True, indent=4, separators=(',', ': '))
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