This is a plugin to install and run yolo on 2D image/movie in Fiji.
This plugin is based on Appose, that automatically installs python environement and allows python script execution with shared objects with Fiji.
To install the plugin, download and copy the .jar file in the plugins directory of Fiji, and restart Fiji. The plugin should now be accessible in the plugin menu.
Note
The python environment will be automatically installed in your home .local\shared\appose directory and activated from the plugin when needed.
From Fiji, open the image that you want to process.
Launch the plugin from Plugins>Yolo-Appose>yolo appose.
An interface will pop-up to let you choose the parameters to run Cellpose.