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Merged
merged 105 commits into from
Dec 3, 2025
Merged

Initial 2.0 feature set #40

merged 105 commits into from
Dec 3, 2025

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@alanbchristie
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@alanbchristie alanbchristie commented Dec 2, 2025

  • Basic fan-out/fan-in support (splitter/combiner)
  • Works with workflow branch workflow definitioin in virtual-screening

Alan Christie and others added 30 commits June 23, 2025 09:40
feat: kind-version now 2025.2
a74ff91 
BREAKING CHANGE
feat: Initial schema for replicate step declaration
d955a19
feat: Add get_generated_outputs_for_step_output() to API adapter
ab94bd7
feat: Rename new API method
b4be311
feat: Add replica to step creation (and step-by-name query)
27c5a83
feat: Removed 'as' from workflow mapping output declaration
1d22716
feat: Add get_running_workflow_step_output_values_for_output() to API
0c60799
fix: Removed rogue 'print' statement
12b3602
test: Add mock of step outputs
da12869
@kaliif
fix: it's a mess
cc5d8cc
docs: Add instance-directory comment
ad00205
feat: Creating instances now adds instance-directory property to step…
95eafcb 
… record
fix: get_instance() response type
f37ea74
test: Add tests for instance_directory
13e4470
@alanbchristie
Merge pull request #33 from InformaticsMatters/instance-directory
37d5ad2 
Add "instance_directory" property
@kaliif
Merge branch '2.0' into fanout-jobs
294c765
build: Add experimental json copy of the schema
84866d0
style: Removed unnecessary json schema file
20a0e3e
fix: Better rfc1035-label-name pattern
82f14bf
fix: Better rfc1035-label-name regex
de34339
test: Fix decoder tests
e7adc1b
@kaliif
Merge branch '2.0' into fanout-jobs
d946546
test: Fix test module name (for consistency)
00e49bb
@alanbchristie
Remove unnecessary logic
39bb840
@alanbchristie
Merge pull request #34 from InformaticsMatters/alanbchristie-patch-1
30ba59b 
Remove unnecessary logic
@kaliif
fix: stashing
2a6b708
@kaliif
fix: stashing
340670e
refactor: Major refactor (new variable-mapping schema)
e3ece79
refactor: from-workflow-variable becomes from-workflow
f9d4aca
refactor: from-workflow-variable becomes from-workflow
2c4c867
Alan Christie and others added 25 commits September 24, 2025 07:25
docs: More doc and typo corrections
a3f76ed
docs: Code typos corrected
18d9a82
dev: Logs end of step and end of running workflow
d37caf0
dev: Engine now collects inputs and sets LP inputs & outputs
594c0e8
style: Log inputs
17ddd62
dev: Fix handling of launch() result
1d41048
fix: Better handling of get_running_workflow_step_by_name() response
3fe5969
feat: Engine now attempts to prefix inputs (from prior steps)
ac23732
fix: Fix prior-step prefix
b788cd0
fix: Launch parameter sets are now lists
cde958a
dev: fix build
a5774b0
docs: Doc tweak
43c516f
dev: Fix instance prefix
079736c
fix: Engine now handles lack of job better
cf6cfbe
fix: Validator now ensures jobs exist (run-level test)
b61baa7
fix: Better testing of validation (job must be present)
e90a313
feat: Better validation error message
967b3b3
test: Fix tests
aca2891
fix: Better handling of lack of outputs
edc70ee
docs: Doc tweak
d67ce50
fix: Fix iteration input path
a5113f3
test: Disable unit test
515b7f5
fix: Support for dirsGlob
564e6a5
fix: Better step preparation initial log (combiners)
350f303
@alanbchristie
fix: Combiners no longer get built-in variables automatically (#39)
5743f97
@alanbchristie alanbchristie self-assigned this Dec 2, 2025
@alanbchristie alanbchristie requested a review from kaliif December 2, 2025 16:46
@achristie-im achristie-im merged commit 9946f25 into main Dec 3, 2025
4 checks passed
@achristie-im achristie-im deleted the 2.0 branch December 3, 2025 12:46
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@kaliif kaliif kaliif approved these changes

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@alanbchristie @kaliif @achristie-im