threads build

CITATION.cff

@@ -10,7 +10,7 @@ type: software
 authors:
   - given-names: Matthew
     family-names: McCormick
-    email: matt@mmmccormick.com
+    email: matt@fideus.io
     affiliation: 'Kitware, Inc'
     orcid: 'https://orcid.org/0000-0001-9475-3756'
 keywords:

examples/debugging/package.json

@@ -6,18 +6,18 @@
     "build": "npm run native-build && npm run emscripten-build-release && npm run emscripten-build-debug && npm run wasi-build-release && npm run wasi-build-debug",
     "native-build": "cmake -Bbuild -S. -DCMAKE_BUILD_TYPE=Debug && cmake --build build/ --config Debug",
     "native-debug-linux": "gdb --args ./build/DebugMe",
-    "emscripten-build-release": "itk-wasm -i quay.io/itkwasm/emscripten:latest --build-dir emscripten-build-release build",
+    "emscripten-build-release": "itk-wasm -i docker.io/itkwasm/emscripten:latest --build-dir emscripten-build-release build",
     "run-node-release": "node ./runEmscriptenNode.js ./emscripten-build-release/DebugMe",
-    "emscripten-build-debug": "itk-wasm -i quay.io/itkwasm/emscripten:latest-debug --build-dir emscripten-build-debug build -- -DCMAKE_BUILD_TYPE=Debug",
+    "emscripten-build-debug": "itk-wasm -i docker.io/itkwasm/emscripten:latest-debug --build-dir emscripten-build-debug build -- -DCMAKE_BUILD_TYPE=Debug",
     "run-node-debug": "node ./runEmscriptenNode.js ./emscripten-build-debug/DebugMe",
-    "wasi-build-release": "itk-wasm -i quay.io/itkwasm/wasi:latest --build-dir wasi-build-release build",
+    "wasi-build-release": "itk-wasm -i docker.io/itkwasm/wasi:latest --build-dir wasi-build-release build",
     "node-inspect": "node --inspect-brk ./runEmscriptenNode.js ./emscripten-build-debug/DebugMe",
-    "wasi-build-debug": "itk-wasm -i quay.io/itkwasm/wasi:latest-debug --build-dir wasi-build-debug build -- -DCMAKE_BUILD_TYPE=Debug",
+    "wasi-build-debug": "itk-wasm -i docker.io/itkwasm/wasi:latest-debug --build-dir wasi-build-debug build -- -DCMAKE_BUILD_TYPE=Debug",
     "run-wasi-debug": "itk-wasm --build-dir wasi-build-debug run DebugMe.wasi.wasm",
     "start": "http-server -o"
   },
   "type": "module",
-  "author": "Matt McCormick <matt@mmmccormick.com>",
+  "author": "Matt McCormick <matt@fideus.io>",
   "license": "Apache-2.0",
   "dependencies": {
     "http-server": "^14.1.0",

examples/different-input-types/package.json

@@ -5,12 +5,12 @@
   "type": "module",
   "scripts": {
     "build": "pnpm run build:wasi",
-    "build:wasi": "itk-wasm -b wasi-build -i quay.io/itkwasm/wasi:latest build",
+    "build:wasi": "itk-wasm -b wasi-build -i docker.io/itkwasm/wasi:latest build",
     "test": "pnpm run test:wasi",
     "test:wasi": "itk-wasm -b wasi-build run different-input-types.wasi.wasm -- ./Gourds.png label.png overlay.png",
     "test:wasi:help": "itk-wasm -b wasi-build run different-input-types.wasi.wasm -- --help"
   },
-  "author": "Matt McCormick <matt@mmmccormick.com>",
+  "author": "Matt McCormick <matt@fideus.io>",
   "license": "Apache-2.0",
   "dependencies": {
     "itk-wasm": "workspace:^"

examples/hello-pipeline/package.json

@@ -9,7 +9,7 @@
     "test:quiet": "itk-wasm run wasi-build/hello-pipeline.wasi.wasm -- --quiet cthead1.png",
     "test:help": "itk-wasm run wasi-build/hello-pipeline.wasi.wasm -- --help"
   },
-  "author": "Matt McCormick <matt@mmmccormick.com>",
+  "author": "Matt McCormick <matt@fideus.io>",
   "license": "Apache-2.0",
   "dependencies": {
     "fs-extra": "^10.0.0",

examples/hello-world/package.json

@@ -6,7 +6,7 @@
   "type": "module",
   "scripts": {
     "build": "pnpm run build:wasi && pnpm run build:emscripten",
-    "build:wasi": "itk-wasm -i quay.io/itkwasm/wasi:latest build",
+    "build:wasi": "itk-wasm -i docker.io/itkwasm/wasi:latest build",
     "build:emscripten": "itk-wasm build",
     "test": "pnpm run test:wasi && pnpm run test:node && pnpm run test:browser",
     "test:wasi": "pnpx itk-wasm run wasi-build/hello.wasi.wasm",
@@ -15,7 +15,7 @@
     "test:browser": "playwright test",
     "test:browser:debug": "playwright test --debug"
   },
-  "author": "Matt McCormick <matt@mmmccormick.com>",
+  "author": "Matt McCormick <matt@fideus.io>",
   "license": "Apache-2.0",
   "dependencies": {
     "fs-extra": "^11.1.0",

examples/inputs-outputs/package.json

@@ -5,8 +5,8 @@
   "description": "An itk-wasm pipeline example for inputs/outputs",
   "type": "module",
   "itk-wasm": {
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "typescript-package-name": "@itk-wasm/inputs-outputs-example",
     "python-package-name": "itkwasm-inputs-outputs-example",
     "package-description": "An example that has non-trivial inputs and outputs.",
@@ -38,7 +38,7 @@
     "test:wasi": "itk-wasm -i itkwasm/wasi:latest -b wasi-build run inputs-outputs.wasi.wasm -- -- cthead1.png smoothed.png",
     "test:wasi:help": "itk-wasm -i itkwasm/wasi:latest -b wasi-build run inputs-outputs.wasi.wasm -- -- --help"
   },
-  "author": "Matt McCormick <matt@mmmccormick.com>",
+  "author": "Matt McCormick <matt@fideus.io>",
   "license": "Apache-2.0",
   "devDependencies": {
     "@itk-wasm/image-io": "workspace:^",

examples/mean-squares-versor-registration/package.json

@@ -5,8 +5,8 @@
   "description": "Illustrate the use of the VersorRigid3DTransform for 3D image registration.",
   "type": "module",
   "itk-wasm": {
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "typescript-package-name": "@itk-wasm/mean-squares-versor-registration-example",
     "python-package-name": "itkwasm-mean-squares-versor-registration-example",
     "package-description": "Example 3D versor transform registration with a mean-squares similarity metric",
@@ -38,7 +38,7 @@
     "test:wasi:long": "itk-wasm test -- -- -V",
     "test:wasi:help": "itk-wasm -i itkwasm/wasi:latest run mean-squares-versor-registration.wasi.wasm -- -- --help"
   },
-  "author": "Matt McCormick <matt@mmmccormick.com>",
+  "author": "Matt McCormick <matt@fideus.io>",
   "license": "Apache-2.0",
   "devDependencies": {
     "@itk-wasm/image-io": "workspace:^",

include/itkPipeline.h

@@ -25,6 +25,13 @@
 #include "itkMacro.h"
 #include "itkImage.h"
 #include "itkVectorImage.h"
+#include "itkConfigure.h"
+#if defined(ITK_USE_PTHREADS) || defined(ITK_USE_WIN32_THREADS)
+#define ITK_WASM_PIPELINE_USE_THREADS 1
+#endif
+#ifdef ITK_WASM_PIPELINE_USE_THREADS
+#include "itkMultiThreaderBase.h"
+#endif
 
 #include "glaze/glaze.hpp"
 
@@ -164,6 +171,16 @@ class WebAssemblyInterface_EXPORT Pipeline : public CLI::App
     return m_UseMemoryIO;
   }
 
+  int
+  get_threads() const
+  {
+#ifdef ITK_WASM_PIPELINE_USE_THREADS
+    return m_Threads;
+#else
+    return 1;
+#endif
+  }
+
   int
   get_argc() const
   {
@@ -198,6 +215,9 @@ class WebAssemblyInterface_EXPORT Pipeline : public CLI::App
   int         m_argc;
   char **     m_argv;
   std::string m_Version;
+#ifdef ITK_WASM_PIPELINE_USE_THREADS
+  int         m_Threads;
+#endif
 };
 
 

packages/compare-images/package.json

@@ -5,8 +5,8 @@
   "description": "@itk-wasm/compare-stringify build configuration",
   "type": "module",
   "itk-wasm": {
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "test-data-hash": "bafybeiafli6egtmkcgany65po64w67hpqnmgwr5utqo6ycbbz7k5l33llu",
     "test-data-urls": [
       "https://github.com/InsightSoftwareConsortium/ITK-Wasm/releases/download/itk-wasm-v1.0.0-b.171/compare-images-test-data.tar.gz"

packages/compare-images/pixi.toml

@@ -1,5 +1,5 @@
 [project]
-authors = ["Matt McCormick <matt@mmmccormick.com>"]
+authors = ["Matt McCormick <matt@fideus.io>"]
 channels = ["conda-forge"]
 description = "Compare images with a tolerance for regression testing."
 name = "compare-images"

packages/compare-meshes/package.json

@@ -5,8 +5,8 @@
   "description": "@itk-wasm/compare-meshes build configuration.",
   "type": "module",
   "itk-wasm": {
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "test-data-hash": "bafkreibsonywg3w3gscmookip3elsyydfsn2cbubk6dukatkmjgeguhiri",
     "test-data-urls": [
       "https://github.com/InsightSoftwareConsortium/ITK-Wasm/releases/download/itk-wasm-v1.0.0-b.178/compare-meshes-data.tar.gz"

packages/compare-meshes/pixi.toml

@@ -1,5 +1,5 @@
 [project]
-authors = ["Matt McCormick <matt@mmmccormick.com>"]
+authors = ["Matt McCormick <matt@fideus.io>"]
 channels = ["conda-forge"]
 description = "Compare meshes with a tolerance for regression testing."
 name = "compare-meshes"

packages/compress-stringify/package.json

@@ -5,8 +5,8 @@
   "description": "@itk-wasm/compare-stringify build configuration.",
   "type": "module",
   "itk-wasm": {
-    "emscripten-docker-image": "quay.io/itkwasm/emscripten:latest",
-    "wasi-docker-image": "quay.io/itkwasm/wasi:latest",
+    "emscripten-docker-image": "docker.io/itkwasm/emscripten:latest",
+    "wasi-docker-image": "docker.io/itkwasm/wasi:latest",
     "test-data-hash": "bafkreiha6oye3fd5cxfadnua5r2jlkaco2xuyeek454d2ihiffsx7rauqe",
     "test-data-urls": [
       "https://placeholder"

packages/compress-stringify/pixi.toml

@@ -1,5 +1,5 @@
 [project]
-authors = ["Matt McCormick <matt@mmmccormick.com>"]
+authors = ["Matt McCormick <matt@fideus.io>"]
 channels = ["conda-forge"]
 description = "Zstandard compression and decompression and base64 encoding and decoding in WebAssembly."
 name = "compress-stringify"

packages/core/typescript/itk-wasm/package.json

@@ -33,15 +33,15 @@
     "test:lint": "ts-standard --fix \"src/**/*.ts\" && standard --fix \"test/node/**/*.js\"",
     "test:node": "ava test/node/**/*.js",
     "test:testPipelines": "pnpm test:buildTestPipelines:emscripten && pnpm test:buildTestPipelines:wasi && pnpm test:runTestPipelines",
-    "test:buildTestPipelines:emscripten:debug": "node src/itk-wasm-cli.js -i quay.io/itkwasm/emscripten:latest-debug -b emscripten-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
-    "test:buildTestPipelines:emscripten": "node src/itk-wasm-cli.js -i quay.io/itkwasm/emscripten:latest -b emscripten-build -s ./test/pipelines build",
-    "test:buildTestPipelines:emscriptenThreads:debug": "node src/itk-wasm-cli.js -i quay.io/itkwasm/emscripten:latest-threads-debug -b emscripten-threads-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
-    "test:buildTestPipelines:emscriptenThreads": "node src/itk-wasm-cli.js -i quay.io/itkwasm/emscripten:latest-threads -b emscripten-threads-build -s ./test/pipelines build",
-    "test:buildTestPipelines:wasi": "node src/itk-wasm-cli.js -i quay.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines build",
-    "test:buildTestPipelines:wasi:debug": "node src/itk-wasm-cli.js -i quay.io/itkwasm/wasi:latest-debug -b wasi-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
-    "test:runTestPipelines": "node src/itk-wasm-cli.js -i quay.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines run -r wasmtime stdout-stderr-pipeline/stdout-stderr-test.wasi.wasm",
-    "test:bindgenTestPipelines:typescript": "node src/itk-wasm-cli.js -i quay.io/itkwasm/emscripten:latest -b emscripten-build -s ./test/pipelines/ bindgen --package-version 1.0.0 --package-name test-pipelines --package-description \"Exercise interface types for bindgen\"",
-    "test:bindgenTestPipelines:python": "node src/itk-wasm-cli.js -i quay.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines/ bindgen --interface python --package-version 1.0.0 --package-name test-pipelines --package-description \"Exercise interface types for bindgen\"",
+    "test:buildTestPipelines:emscripten:debug": "node src/itk-wasm-cli.js -i docker.io/itkwasm/emscripten:latest-debug -b emscripten-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
+    "test:buildTestPipelines:emscripten": "node src/itk-wasm-cli.js -i docker.io/itkwasm/emscripten:latest -b emscripten-build -s ./test/pipelines build",
+    "test:buildTestPipelines:emscriptenThreads:debug": "node src/itk-wasm-cli.js -i docker.io/itkwasm/emscripten:latest-threads-debug -b emscripten-threads-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
+    "test:buildTestPipelines:emscriptenThreads": "node src/itk-wasm-cli.js -i docker.io/itkwasm/emscripten:latest-threads -b emscripten-threads-build -s ./test/pipelines build",
+    "test:buildTestPipelines:wasi": "node src/itk-wasm-cli.js -i docker.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines build",
+    "test:buildTestPipelines:wasi:debug": "node src/itk-wasm-cli.js -i docker.io/itkwasm/wasi:latest-debug -b wasi-build -s ./test/pipelines build -- -DCMAKE_BUILD_TYPE=Debug",
+    "test:runTestPipelines": "node src/itk-wasm-cli.js -i docker.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines run -r wasmtime stdout-stderr-pipeline/stdout-stderr-test.wasi.wasm",
+    "test:bindgenTestPipelines:typescript": "node src/itk-wasm-cli.js -i docker.io/itkwasm/emscripten:latest -b emscripten-build -s ./test/pipelines/ bindgen --package-version 1.0.0 --package-name test-pipelines --package-description \"Exercise interface types for bindgen\"",
+    "test:bindgenTestPipelines:python": "node src/itk-wasm-cli.js -i docker.io/itkwasm/wasi:latest -b wasi-build -s ./test/pipelines/ bindgen --interface python --package-version 1.0.0 --package-name test-pipelines --package-description \"Exercise interface types for bindgen\"",
     "test:browser": "playwright test",
     "test:browser:ui": "playwright test --ui",
     "test:browser:debug": "playwright test --debug",

packages/core/typescript/itk-wasm/src/cli/default-image-tag.js

@@ -1,2 +1,2 @@
-const defaultImageTag = '20250813-cd217d20'
+const defaultImageTag = '20250902-fb36664b'
 export default defaultImageTag

packages/core/typescript/itk-wasm/src/cli/find-oci-exe.js

@@ -1,46 +1,46 @@
-import fs from 'fs'
-import path from 'path'
-import os from 'os'
-
-import chalk from 'chalk'
-
-import die from './die.js'
-
-function findOciExe() {
-  // Check for OCI_EXE environmental variable
-  const ociExe = process.env.OCI_EXE
-  if (ociExe && fs.existsSync(ociExe)) {
-    return ociExe
-  }
-
-  // Get the PATH environment variable
-  const PATH = process.env.PATH.split(path.delimiter)
-
-  // Check for podman executable
-  const podmanExe = os.platform() === 'win32' ? 'podman.exe' : 'podman'
-  for (let p of PATH) {
-    if (fs.existsSync(path.join(p, podmanExe))) {
-      return podmanExe
-    }
-  }
-
-  // Check for docker executable
-  const dockerExe = os.platform() === 'win32' ? 'docker.exe' : 'docker'
-  for (let p of PATH) {
-    if (fs.existsSync(path.join(p, dockerExe))) {
-      return dockerExe
-    }
-  }
-
-  // If none of the above exist, die
-  die(`${chalk.magenta(`Could not find podman or docker executable in the
-    PATH or OCI_EXE environmental variables.`)}
-
-${chalk.blue(`Please find installation instructions at:
-
-    https://podman.io/docs/installation`)}
-
-`)
-}
-
-export default findOciExe
+import fs from 'fs'
+import path from 'path'
+import os from 'os'
+
+import chalk from 'chalk'
+
+import die from './die.js'
+
+function findOciExe() {
+  // Check for OCI_EXE environmental variable
+  const ociExe = process.env.OCI_EXE
+  if (ociExe) {
+    return ociExe
+  }
+
+  // Get the PATH environment variable
+  const PATH = process.env.PATH.split(path.delimiter)
+
+  // Check for podman executable
+  const podmanExe = os.platform() === 'win32' ? 'podman.exe' : 'podman'
+  for (let p of PATH) {
+    if (fs.existsSync(path.join(p, podmanExe))) {
+      return podmanExe
+    }
+  }
+
+  // Check for docker executable
+  const dockerExe = os.platform() === 'win32' ? 'docker.exe' : 'docker'
+  for (let p of PATH) {
+    if (fs.existsSync(path.join(p, dockerExe))) {
+      return dockerExe
+    }
+  }
+
+  // If none of the above exist, die
+  die(`${chalk.magenta(`Could not find podman or docker executable in the
+    PATH or OCI_EXE environmental variables.`)}
+
+${chalk.blue(`Please find installation instructions at:
+
+    https://podman.io/docs/installation`)}
+
+`)
+}
+
+export default findOciExe

packages/core/typescript/itk-wasm/src/cli/pnpm-script.js

@@ -96,7 +96,7 @@ async function pnpmScript(name, extraArgs, options) {
             options,
             packageJson,
             undefined
-          ) ?? `quay.io/itkwasm/emscripten:${defaultImageTag}`
+          ) ?? `docker.io/itkwasm/emscripten:${defaultImageTag}`
         pnpmCommand = pnpmCommand.concat(['-i', emscriptenDockerImage])
       }
       break
@@ -109,7 +109,7 @@ async function pnpmScript(name, extraArgs, options) {
             options,
             packageJson,
             undefined
-          ) ?? `quay.io/itkwasm/emscripten:${defaultImageTag}`
+          ) ?? `docker.io/itkwasm/emscripten:${defaultImageTag}`
         // Currently, we expect the debug docker image to be tagged with -debug
         pnpmCommand = pnpmCommand.concat([
           '-i',
@@ -126,7 +126,7 @@ async function pnpmScript(name, extraArgs, options) {
         pnpmCommand = pnpmCommand.concat(['itk-wasm', 'build'])
         const wasiDockerImage =
           configValue('wasi-docker-image', options, packageJson, undefined) ??
-          `quay.io/itkwasm/wasi:${defaultImageTag}`
+          `docker.io/itkwasm/wasi:${defaultImageTag}`
         pnpmCommand = pnpmCommand.concat(['-i', wasiDockerImage])
       }
       break
@@ -135,7 +135,7 @@ async function pnpmScript(name, extraArgs, options) {
         pnpmCommand = pnpmCommand.concat(['itk-wasm', 'build'])
         const wasiDockerImage =
           configValue('wasi-docker-image', options, packageJson, undefined) ??
-          `quay.io/itkwasm/wasi:${defaultImageTag}`
+          `docker.io/itkwasm/wasi:${defaultImageTag}`
         // Currently, we expect the debug docker image to be tagged with -debug
         pnpmCommand = pnpmCommand.concat(['-i', `${wasiDockerImage}-debug`])
         pnpmCommand = pnpmCommand.concat([
@@ -203,7 +203,7 @@ async function pnpmScript(name, extraArgs, options) {
             options,
             packageJson,
             undefined
-          ) ?? `quay.io/itkwasm/emscripten:${defaultImageTag}`
+          ) ?? `docker.io/itkwasm/emscripten:${defaultImageTag}`
         const packageDescription = configValue(
           'package-description',
           options,
@@ -262,7 +262,7 @@ async function pnpmScript(name, extraArgs, options) {
         )
         const wasiDockerImage =
           configValue('wasi-docker-image', options, packageJson, undefined) ??
-          `quay.io/itkwasm/wasi:${defaultImageTag}`
+          `docker.io/itkwasm/wasi:${defaultImageTag}`
         pnpmCommand = pnpmCommand.concat([
           'itk-wasm',
           '-b',

packages/core/typescript/itk-wasm/src/cli/process-common-options.js

@@ -11,11 +11,11 @@ function processCommonOptions(program, wasiDefault = false) {
 
   const ociExePath = findOciExe()
 
-  let dockerImage = `quay.io/itkwasm/emscripten:${defaultImageTag}`
+  let dockerImage = `docker.io/itkwasm/emscripten:${defaultImageTag}`
   if (options.image) {
     dockerImage = options.image
     if (dockerImage === 'itkwasm/wasi') {
-      dockerImage = `quay.io/itkwasm/wasi:${defaultImageTag}`
+      dockerImage = `docker.io/itkwasm/wasi:${defaultImageTag}`
     }
   }