[DEBUG] Issue with undefined symbol in MKL #5200
Workflow file for this run
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| name: Generate coverage data for dpnp | |
| on: | |
| pull_request: | |
| push: | |
| branches: [master] | |
| permissions: read-all | |
| jobs: | |
| prev-release: | |
| name: Install oneAPI with 2025.0 | |
| runs-on: ubuntu-latest | |
| permissions: | |
| # Needed to cancel any previous runs that are not completed for a given workflow | |
| actions: write | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| env: | |
| environment-file: 'environments/environment.yml' | |
| build-with-oneapi-env: 'environments/build_with_oneapi.yml' | |
| coverage-env: 'environments/coverage.yml' | |
| oneapi-pkgs-env: '' | |
| # Enable env when it's required to use only conda packages without OneAPI installation | |
| # oneapi-pkgs-env: '${{ github.workspace }}/environments/oneapi_pkgs.yml' | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/cancel-workflow-action@85880fa0301c86cca9da44039ee3bb12d3bedbfa # 0.12.1 | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Add Intel repository | |
| if: env.oneapi-pkgs-env == '' | |
| run: | | |
| wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| cat GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null | |
| rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | |
| sudo apt update | |
| - name: Install latest Intel OneAPI | |
| if: env.oneapi-pkgs-env == '' | |
| run: | | |
| sudo apt install hwloc \ | |
| intel-oneapi-mkl=2025.0.1-14 \ | |
| intel-oneapi-umf=0.9.1-6 \ | |
| intel-oneapi-mkl-devel=2025.0.1-14 \ | |
| intel-oneapi-tbb-devel=2022.0.0-402 \ | |
| intel-oneapi-libdpstd-devel=2022.7.1-14 \ | |
| intel-oneapi-compiler-dpcpp-cpp=2025.0.4-1519 | |
| - name: Debug new oneAPI pkgs | |
| run: | | |
| [ -f /opt/intel/oneapi/setvars.sh ] && source /opt/intel/oneapi/setvars.sh | |
| echo "Running LDD:" | |
| sudo ldd /opt/intel/oneapi/mkl/2025.1/lib/libmkl_sycl_vm.so.5 | |
| echo "Running ReadELF:" | |
| sudo readelf -d /opt/intel/oneapi/mkl/2025.1/lib/libmkl_sycl_vm.so.5 | |
| echo "Searching for libsycl:" | |
| sudo find /opt/intel/oneapi -name "libsycl.so*" | |
| echo "Running LDD with LD_LIBRARY_PATH to compiler:" | |
| sudo LD_LIBRARY_PATH="/opt/intel/oneapi/compiler/2025.1/lib" ldd /opt/intel/oneapi/mkl/2025.1/lib/libmkl_sycl_vm.so.5 | |
| echo "Looking for undefined symbols in libmkl_sycl_vm.so.5:" | |
| sudo nm -A -u /opt/intel/oneapi/mkl/2025.1/lib/libmkl_sycl_vm.so.5 | |
| generate-coverage: | |
| name: Generate coverage and push to Coveralls.io | |
| runs-on: ubuntu-latest | |
| permissions: | |
| # Needed to cancel any previous runs that are not completed for a given workflow | |
| actions: write | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| env: | |
| environment-file: 'environments/environment.yml' | |
| build-with-oneapi-env: 'environments/build_with_oneapi.yml' | |
| coverage-env: 'environments/coverage.yml' | |
| oneapi-pkgs-env: '' | |
| # Enable env when it's required to use only conda packages without OneAPI installation | |
| # oneapi-pkgs-env: '${{ github.workspace }}/environments/oneapi_pkgs.yml' | |
| steps: | |
| - name: Cancel Previous Runs | |
| uses: styfle/cancel-workflow-action@85880fa0301c86cca9da44039ee3bb12d3bedbfa # 0.12.1 | |
| with: | |
| access_token: ${{ github.token }} | |
| - name: Add Intel repository | |
| if: env.oneapi-pkgs-env == '' | |
| run: | | |
| wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| cat GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null | |
| rm GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | |
| echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | |
| sudo apt update | |
| - name: Install latest Intel OneAPI | |
| if: env.oneapi-pkgs-env == '' | |
| run: | | |
| sudo apt install hwloc \ | |
| intel-oneapi-mkl \ | |
| intel-oneapi-umf \ | |
| intel-oneapi-mkl-devel \ | |
| intel-oneapi-tbb-devel \ | |
| intel-oneapi-libdpstd-devel \ | |
| intel-oneapi-compiler-dpcpp-cpp | |
| - name: Debug new oneAPI pkgs | |
| run: | | |
| [ -f /opt/intel/oneapi/setvars.sh ] && source /opt/intel/oneapi/setvars.sh | |
| echo "Running LDD:" | |
| sudo ldd /opt/intel/oneapi/mkl/2025.1/lib/libmkl_sycl_vm.so.5 | |
| echo "Running ReadELF:" | |
| sudo readelf -d /opt/intel/oneapi/mkl/2025.1/lib/libmkl_sycl_vm.so.5 | |
| echo "Searching for libsycl:" | |
| sudo find /opt/intel/oneapi -name "libsycl.so*" | |
| echo "Running LDD with LD_LIBRARY_PATH to compiler:" | |
| sudo LD_LIBRARY_PATH="/opt/intel/oneapi/compiler/2025.1/lib" ldd /opt/intel/oneapi/mkl/2025.1/lib/libmkl_sycl_vm.so.5 | |
| echo "Looking for undefined symbols in libmkl_sycl_vm.so.5:" | |
| sudo nm -A -u /opt/intel/oneapi/mkl/2025.1/lib/libmkl_sycl_vm.so.5 | |
| - name: Install Lcov | |
| run: | | |
| sudo apt-get install lcov | |
| sudo gem install coveralls-lcov | |
| - name: Checkout repo | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install conda-merge tool | |
| uses: BSFishy/pip-action@8f2d471d809dc20b6ada98c91910b6ae6243f318 # v1 | |
| with: | |
| packages: conda-merge | |
| - name: Merge conda env files | |
| run: | | |
| conda-merge ${{ env.build-with-oneapi-env }} ${{ env.coverage-env }} ${{ env.oneapi-pkgs-env }} > ${{ env.environment-file }} | |
| cat ${{ env.environment-file }} | |
| - name: Setup miniconda | |
| id: setup_miniconda | |
| continue-on-error: true | |
| uses: conda-incubator/setup-miniconda@505e6394dae86d6a5c7fbb6e3fb8938e3e863830 # v3.1.1 | |
| with: | |
| miniforge-version: latest | |
| use-mamba: 'true' | |
| conda-remove-defaults: 'true' | |
| environment-file: ${{ env.environment-file }} | |
| activate-environment: 'coverage' | |
| - name: ReSetup miniconda | |
| if: steps.setup_miniconda.outcome == 'failure' | |
| uses: conda-incubator/setup-miniconda@505e6394dae86d6a5c7fbb6e3fb8938e3e863830 # v3.1.1 | |
| with: | |
| miniforge-version: latest | |
| use-mamba: 'true' | |
| conda-remove-defaults: 'true' | |
| environment-file: ${{ env.environment-file }} | |
| activate-environment: 'coverage' | |
| - name: Conda info | |
| run: | | |
| mamba info | |
| mamba list | |
| - name: Build dpnp with coverage | |
| id: build_coverage | |
| uses: nick-fields/retry@ce71cc2ab81d554ebbe88c79ab5975992d79ba08 # v3.0.2 | |
| with: | |
| shell: bash | |
| timeout_minutes: 60 | |
| max_attempts: 5 | |
| retry_on: error | |
| command: | | |
| . $CONDA/etc/profile.d/conda.sh | |
| conda activate coverage | |
| [ -f /opt/intel/oneapi/setvars.sh ] && source /opt/intel/oneapi/setvars.sh | |
| git clean -fxd | |
| python scripts/gen_coverage.py --verbose | |
| - name: Total number of coverage attempts | |
| run: | | |
| echo "Total number of coverage attempts: ${{ steps.build_coverage.outputs.total_attempts }}" | |
| - name: Upload coverage data to coveralls.io | |
| run: | | |
| echo "Processing pytest-coverage" | |
| export DPNP_PYTEST_LCOV=$(find . -name dpnp_pytest.lcov) | |
| coveralls-lcov -v -n $DPNP_PYTEST_LCOV > pytest-dpnp-c-api-coverage.json | |
| # merge file with coverage data and upload | |
| echo "Merging files with coverage data" | |
| coveralls --service=github --merge=pytest-dpnp-c-api-coverage.json | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_PARALLEL: true | |
| coveralls: | |
| name: Indicate completion to coveralls.io | |
| needs: generate-coverage | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Finished | |
| run: | | |
| pip3 install --upgrade coveralls==3.3.1 | |
| coveralls --service=github --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |