release/1.9.0: Update config files for some tier1 machines

configs/sites/tier1/hera/compilers.yaml

@@ -8,6 +8,7 @@ compilers:
       fc: /apps/oneapi/compiler/2022.0.2/linux/bin/intel64/ifort
     flags: {}
     operating_system: rocky8
+    target: x86_64
     modules:
     - intel/2022.1.2
     environment:
@@ -17,17 +18,23 @@ compilers:
         CPATH: '/apps/gnu/gcc-9.2.0/include'
     extra_rpaths: []
 - compiler:
-    spec: gcc@13.2.0
+    spec: gcc@13.3.0
     paths:
-      cc: /apps/gnu/gcc-13.2.0/bin/gcc
-      cxx: /apps/gnu/gcc-13.2.0/bin/g++
-      f77: /apps/gnu/gcc-13.2.0/bin/gfortran
-      fc:  /apps/gnu/gcc-13.2.0/bin/gfortran
+      cc: /contrib/spack-stack/installs/gnu/13.3.0/bin/gcc
+      cxx: /contrib/spack-stack/installs/gnu/13.3.0/bin/g++
+      f77: /contrib/spack-stack/installs/gnu/13.3.0/bin/gfortran
+      fc: /contrib/spack-stack/installs/gnu/13.3.0/bin/gfortran
     flags: {}
     operating_system: rocky8
+    target: x86_64
     modules:
-    - gnu/13.2.0
-    environment: {}
+    - gnu/13.3.0
+    environment:
+      prepend_path:
+        MODULEPATH: '/contrib/spack-stack/installs/gnu/modulefiles'
+        PATH: '/contrib/spack-stack/installs/ucx/ucx-1.20.0/bin'
+        LD_LIBRARY_PATH: '/contrib/spack-stack/installs/ucx/ucx-1.20.0/lib'
+        PKG_CONFIG_PATH: '/contrib/spack-stack/installs/ucx/ucx-1.20.0/lib/pkgconfig'
     extra_rpaths: []
 - compiler:
     spec: [email protected]
@@ -38,6 +45,7 @@ compilers:
       fc: /apps/oneapi/compiler/2024.2/bin/ifort
     flags: {}
     operating_system: rocky8
+    target: x86_64
     modules:
     - intel/2024.2.1
     environment:

configs/sites/tier1/hera/packages.yaml

@@ -2,6 +2,15 @@ packages:
   all:
     # To support hecflow01
     target: [haswell]
+    providers:
+      zlib-api:: [zlib]
+  zlib-api:
+    buildable: False
+  zlib:
+    buildable: False
+    externals:
+    - spec: [email protected]
+      prefix: /usr
   autoconf:
     externals:
     - spec: [email protected]

configs/sites/tier1/hera/packages_gcc.yaml

@@ -1,13 +1,14 @@
 packages:
   all:
-    compiler:: [gcc@13.2.0]
+    compiler:: [gcc@13.3.0]
     providers:
       mpi:: [[email protected]]
   mpi:
     buildable: False
   openmpi:
     externals:
-    - spec: [email protected]~atomics~cuda~cxx~cxx_exceptions~gpfs~internal-hwloc~internal-libevent~internal-pmix~java+legacylaunchers~lustre~memchecker~openshmem~orterunprefix+pmi+romio+rsh~singularity+static+vt+wrapper-rpath fabrics=ucx schedulers=slurm
+    - spec: [email protected]~cuda~cxx~cxx_exceptions~java+lustre~memchecker+pmi~static~wrapper-rpath schedulers=slurm fabrics=ucx
+      prefix: /contrib/spack-stack/installs/openmpi/4.1.6
       modules:
-      - gnu/13.2.0
+      - gnu/13.3.0
       - openmpi/4.1.6

configs/sites/tier1/hera/packages_intel.yaml

@@ -32,6 +32,3 @@ packages:
     require::
     - '^openblas'
   # *DH
-  zlib-ng:
-    require:
-      - '~shared'

configs/sites/tier1/hera/packages_oneapi.yaml

@@ -35,9 +35,6 @@ packages:
     - '@1.26'
     - '^openblas'
   # *DH
-  zlib-ng:
-    require:
-      - '~shared'
   cdo:
     require:
       - '@2.3.0'

configs/sites/tier1/hercules/compilers.yaml

@@ -42,16 +42,18 @@ compilers:
         I_MPI_EXTRA_FILESYSTEM: 'ON'
     extra_rpaths: []
 - compiler:
-    spec: gcc@12.2.0
+    spec: gcc@13.3.0
     paths:
-      cc: /apps/spack-managed/gcc-11.3.1/gcc-12.2.0-7cu3qahzhsxpauy4jlnsbcqmlbkxbbbo/bin/gcc
-      cxx: /apps/spack-managed/gcc-11.3.1/gcc-12.2.0-7cu3qahzhsxpauy4jlnsbcqmlbkxbbbo/bin/g++
-      f77: /apps/spack-managed/gcc-11.3.1/gcc-12.2.0-7cu3qahzhsxpauy4jlnsbcqmlbkxbbbo/bin/gfortran
-      fc: /apps/spack-managed/gcc-11.3.1/gcc-12.2.0-7cu3qahzhsxpauy4jlnsbcqmlbkxbbbo/bin/gfortran
+      cc: /apps/contrib/spack-stack/gnu/installs/gnu/13.3.0/bin/gcc
+      cxx: /apps/contrib/spack-stack/gnu/installs/gnu/13.3.0/bin/g++
+      f77: /apps/contrib/spack-stack/gnu/installs/gnu/13.3.0/bin/gfortran
+      fc: /apps/contrib/spack-stack/gnu/installs/gnu/13.3.0/bin/gfortran
     flags: {}
     operating_system: rocky9
     target: x86_64
     modules:
-    - gcc/12.2.0
-    environment: {}
+    - gnu/13.3.0
+    environment:
+      prepend_path:
+        MODULEPATH: '/apps/contrib/spack-stack/modulefiles'
     extra_rpaths: []

configs/sites/tier1/hercules/packages.yaml

@@ -1,6 +1,6 @@
 packages:
   # For addressing https://github.com/JCSDA/spack-stack/issues/1355
-  #   Use system zlib instead of spack-built zlib-ng
+  # Use system zlib instead of spack-built zlib-ng
   all:
     providers:
       zlib-api:: [zlib]
@@ -9,9 +9,10 @@ packages:
   zlib:
     buildable: False
     externals:
-    - spec: [email protected]
-      prefix: /usr
-
+    - spec: [email protected]
+      prefix: /apps/spack-managed/gcc-11.3.1/zlib-1.2.13-ltp4c3zzde3zi3gf7x4b7c7nj5ww4i4g
+      modules:
+      - zlib/1.2.13
   autoconf:
     externals:
     - spec: [email protected]

configs/sites/tier1/hercules/packages_gcc.yaml

@@ -1,17 +1,17 @@
 packages:
   all:
-    compiler:: [gcc@12.2.0]
+    compiler:: [gcc@13.3.0]
     providers:
-      mpi:: [[email protected].4]
+      mpi:: [[email protected].6]
   mpi:
     buildable: False
   openmpi:
     externals:
-    - spec: [email protected].4%[email protected] ~atomics~cuda~cxx~cxx_exceptions~gpfs~internal-hwloc~internal-libevent~internal-pmix~java~legacylaunchers~lustre~memchecker~openshmem~orterunprefix+pmi+romio+rsh~singularity+static+vt+wrapper-rpath fabrics=none romio-filesystem=none schedulers=slurm  
-      prefix: /apps/spack-managed/gcc-12.2.0/openmpi-4.1.4-hf3dkf6r56x3klzcgs3u7esgt3fhnk63
+    - spec: [email protected].6~atomics~cuda~cxx~cxx_exceptions~java+legacylaunchers~lustre~memchecker~openshmem~orterunprefix+pmi+romio+rsh~singularity+static+vt+wrapper-rpath fabrics=ucx schedulers=slurm
+      prefix: /apps/contrib/spack-stack/openmpi/installs/openmpi/4.1.6
       modules:
-      - gcc/12.2.0
-      - openmpi/4.1.4
+      - gnu/13.3.0
+      - openmpi/4.1.6
 
   ectrans:
     require::
@@ -23,6 +23,3 @@ packages:
     require::
     - '@1.26'
     - '^openblas'
-  zlib-ng:
-    require:
-    - '~shared'

configs/sites/tier1/noaa-aws/packages.yaml

@@ -1,4 +1,14 @@
 packages:
+  all:
+    providers:
+      zlib-api:: [zlib]
+  zlib-api:
+    buildable: False
+  zlib:
+    buildable: False
+    externals:
+    - spec: [email protected]
+      prefix: /usr
   bash:
     externals:
     - spec: [email protected]

configs/sites/tier1/noaa-aws/packages_oneapi.yaml

@@ -35,9 +35,6 @@ packages:
     - '@1.26'
     - '^openblas'
   # *DH
-  zlib-ng:
-    require:
-      - '~shared'
   cdo:
     require:
       - '@2.3.0'

configs/sites/tier1/noaa-azure/packages.yaml

@@ -1,4 +1,14 @@
 packages:
+  all:
+    providers:
+      zlib-api:: [zlib]
+  zlib-api:
+    buildable: False
+  zlib:
+    buildable: False
+    externals:
+    - spec: [email protected]
+      prefix: /usr
   bash:
     externals:
     - spec: [email protected]

configs/sites/tier1/noaa-azure/packages_oneapi.yaml

@@ -35,9 +35,6 @@ packages:
     - '@1.26'
     - '^openblas'
   # *DH
-  zlib-ng:
-    require:
-      - '~shared'
   cdo:
     require:
       - '@2.3.0'

configs/sites/tier1/noaa-gcloud/packages.yaml

@@ -1,4 +1,14 @@
 packages:
+  all:
+    providers:
+      zlib-api:: [zlib]
+  zlib-api:
+    buildable: False
+  zlib:
+    buildable: False
+    externals:
+    - spec: [email protected]
+      prefix: /usr
   bash:
     externals:
     - spec: [email protected]

configs/sites/tier1/noaa-gcloud/packages_oneapi.yaml

@@ -35,9 +35,6 @@ packages:
     - '@1.26'
     - '^openblas'
   # *DH
-  zlib-ng:
-    require:
-      - '~shared'
   cdo:
     require:
       - '@2.3.0'

configs/sites/tier1/orion/packages.yaml

@@ -9,9 +9,10 @@ packages:
   zlib:
     buildable: False
     externals:
-    - spec: [email protected]
-      prefix: /usr
-
+    - spec: [email protected]
+      prefix: /apps/spack-managed/gcc-11.3.1/zlib-1.2.13-ltp4c3zzde3zi3gf7x4b7c7nj5ww4i4g
+      modules:
+      - zlib/1.2.13
   autoconf:
     externals:
     - spec: [email protected]