release/1.9.0: Add [email protected] as additional crtm-fix package to unified environment

[climbfuji]

Description

See title. The common scenario for applying this update on the supported systems, which already have installations of spack-stack-1.9.3 from tag 1.9.3 (hash 58660d3; will be retagged once everything is finalized) is as follows:

# 1. In the spack-stack-1.9.3 directory, run the usual preamble for your system and source setup.sh

# 2. Get latest tag of the spack submodule
cd spack
git remote update
git fetch --tags --force
git checkout spack-stack-1.9.3
git log
cd ..

# 3. Update spack-stack; two options
#   a) PR https://github.com/JCSDA/spack-stack/pull/1778 isn't merged yet

git remote -v show
git remote add dom https://github.com/climbfuji/spack-stack
git remote update
git checkout dom/feature/rel190_crtmfix_addon

#    b) PR https://github.com/JCSDA/spack-stack/pull/1778 was merged and you are on the release/1.9.0 branch locally

git remote update
git pull origin release/1.9.0

# 4. For each unified environment starting with ue- in envs/, do the following (example ue-gcc-11.2.1 on Nautilus):

spack stack create env --name=ue-gcc-11.2.1-crtm-fix-3.1.1.3 --site=nautilus --compiler=gcc --template=unified-dev --upstream=$PWD/envs/ue-gcc-11.2.1/install 2>&1 | tee log.create.ue-gcc-11.2.1-crtm-fix-3.1.1.3.001
spack env activate -p envs/ue-gcc-11.2.1-crtm-fix-3.1.1.3
spack concretize --force --fresh 2>&1 | tee log.concretize.ue-gcc-11.2.1-crtm-fix-3.1.1.3.001

# Verify that there is only one version of [email protected] and that there is no [email protected] in the list of duplicates
./util/show_duplicate_packages.py -d log.concretize.ue-gcc-11.2.1-crtm-fix-3.1.1.3.001

spack install --verbose --no-cache 2>&1 | tee log.install.ue-gcc-11.2.1-crtm-fix-3.1.1.3.001

spack module tcl refresh -y --upstream-modules # replace tcl with lmod as required

spack stack setup-meta-modules

Then, update the release notes for 1.9.3 (see separate list for addon environment installations): #1760

Note that updated the spack-stack wiki release documentation accordingly: https://github.com/JCSDA/spack-stack/wiki/spack%E2%80%90stack%E2%80%901.9.3-release-documentation

Dependencies

None

Issues addressed

Closes JCSDA/spack#565

Applications affected

UFS Global Workflow

Systems affected

All tier-1 platforms

Testing

• CI: Note whether the automatic tests (GitHub actions tests that run automatically for every commit) pass or not
  • GitHub actions CI tests pass in progress
  • GitHub actions CI tests do not pass (provide explanation)
  • GitHub actions CI tests skipped (provide explanation if necessary)
• New tests added: List and describe any new tests added to GitHub actions
  • ...
• Additional testing: Add information on any additional tests conducted
  • Installed the addon environment on Nautilus with GNU following the above instructions

Checklist

• This PR addresses one issue/problem/enhancement or has a very good reason for not doing so.
• These changes have been tested on the affected systems and applications.
• All dependency PRs/issues have been resolved and this PR can be merged.
• All necessary updates to the documentation on readthedocs are included in this PR
  • For site config updates, check in particular doc/source/PreConfiguredSites.rst and doc/source/MaintainersSection.rst
• All necessary updates to the spack-stack wiki were made

[RatkoVasic-NOAA]

Let's commit this and use option b)