Merge remote-tracking branch 'upstream/main' into feature/related-work-annotator

Author: jsochava

.github/workflows/binaries.yml

@@ -147,7 +147,7 @@ jobs:
             displayName: linux-arm
             archivePortable: tar -c -C jabgui/build/packages/ubuntu-22.04-arm JabRef | pigz --rsyncable > jabgui/build/packages/ubuntu-22.04-arm/JabRef-portable_linux_arm64.tar.gz && rm -R jabgui/build/packages/ubuntu-22.04-arm/JabRef
             archivePortableJabKit: tar -c -C jabkit/build/packages/ubuntu-22.04-arm jabkit | pigz --rsyncable > jabkit/build/packages/ubuntu-22.04-arm/jabkit-portable_linux_arm64.tar.gz && rm -R jabkit/build/packages/ubuntu-22.04-arm/jabkit
-            archivePortableJabLS: tar -c -C jabls-cli/build/packages/ubuntu-22.04-arm jabls | pigz --rsyncable > jabls-cli/build/packages/ubuntu-22.04-arm/jabls-cli-portable_linux_arm64.tar.gz && rm -R jabls-cli/build/packages/ubuntu-22.04-arm/jabls
+            archivePortableJabLS: tar -c -C jabls-cli/build/packages/ubuntu-22.04-arm jabls | pigz --rsyncable > jabls-cli/build/packages/ubuntu-22.04-arm/jabls-portable_linux_arm64.tar.gz && rm -R jabls-cli/build/packages/ubuntu-22.04-arm/jabls
             suffix: '_arm64'
             archForDebianRepack: '_arm64'
           - os: windows-latest
@@ -168,7 +168,7 @@ jobs:
             displayName: macOS-arm
             archivePortable: 7z a -r jabgui/build/packages/macos-15/JabRef-portable_macos-arm.zip ./jabgui/build/packages/macos-15/JabRef.app && rm -R jabgui/build/packages/macos-15/JabRef.app
             archivePortableJabKit: 7z a -r jabkit/build/packages/macos-15/jabkit-portable_macos-arm.zip ./jabkit/build/packages/macos-15/jabkit.app && rm -R jabkit/build/packages/macos-15/jabkit.app
-            archivePortableJabLS: 7z a -r jabls-cli/build/packages/macos-15/jabls-portable_macos-arm.zip ./jabls-cli/build/packages/macos-15/jabkit.app && rm -R jabls-cli/build/packages/macos-15/jabls.app
+            archivePortableJabLS: 7z a -r jabls-cli/build/packages/macos-15/jabls-portable_macos-arm.zip ./jabls-cli/build/packages/macos-15/jabls.app && rm -R jabls-cli/build/packages/macos-15/jabls.app
             suffix: '_arm64'
             archForDebianRepack: ''
     runs-on: ${{ matrix.os }}
@@ -342,7 +342,7 @@ jobs:
           rsync -rt --chmod=Du=rwx,Dg=rx,Do=rx,Fu=rw,Fg=r,Fo=r --itemize-changes --stats --rsync-path="mkdir -p /var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }} && rsync" -e 'ssh -p 9922 -i sshkey -o StrictHostKeyChecking=no' jabls-cli/build/packages/${{ matrix.os }}/ [email protected]:/var/www/builds.jabref.org/www/${{ steps.gitversion.outputs.branchName }}/ || true
       - name: Upload to GitHub workflow artifacts store (macOS)
         if: ${{ (startsWith(matrix.os, 'macos')) && (needs.conditions.outputs.should-notarize == 'true') }}
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           # tbn = to-be-notarized
           name: JabRef-${{ matrix.os }}-tbn
@@ -428,7 +428,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
       - name: Download from GitHub workflow artifacts store (macOS)
-        uses: actions/download-artifact@v5
+        uses: actions/download-artifact@v6
         with:
           name: JabRef-${{ matrix.os }}-tbn
       - name: Notarize dmg

.github/workflows/gource.yml

@@ -73,7 +73,7 @@ jobs:
           mv ./gource/gource.mp4 ${{ matrix.file }}
 
       - name: Upload gource video
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: Gource-${{ matrix.file }}
           path: ${{ matrix.file }}

.github/workflows/latex.yml

@@ -99,7 +99,7 @@ jobs:
         working-directory: ${{ matrix.directory }}
 
       - name: Upload build result
-        uses: actions/upload-artifact@v4
+        uses: actions/upload-artifact@v5
         with:
           name: PDF-${{ matrix.tex }}
           path: |

.github/workflows/on-issue-comment.yml

@@ -20,16 +20,25 @@ jobs:
           # If this is updated, also update the number at unassign-issues.yml
           days_until_unassign: 21
           maintainers: 'koppor,Siedlerchr,ThiloteE,calixtus,HoussemNasri,subhramit,InAnYan,LinusDietz'
-          assigned_comment: |
+          assigned_comment: >
             👋 Hey @{{ handle }}, thank you for your interest in this issue! 🎉
 
-            We're excited to have you on board. Start by exploring our [Contributing](https://github.com/JabRef/jabref/blob/main/CONTRIBUTING.md) guidelines, and don't forget to check out our [workspace setup guidelines](https://devdocs.jabref.org/getting-into-the-code/guidelines-for-setting-up-a-local-workspace) to get started smoothly.
 
-            For questions on JabRef functionality and the code base, you can consult the [JabRef Guru](https://gurubase.io/g/jabref) or ask on our Gitter chat.
+            We're excited to have you on board.
+            Start by exploring our [Contributing guidelines](https://github.com/JabRef/jabref/blob/main/CONTRIBUTING.md), and set up your local development workspace by following the steps in our [workspace setup guidelines](https://devdocs.jabref.org/getting-into-the-code/guidelines-for-setting-up-a-local-workspace) to get started smoothly.
+
+
+            For questions on JabRef functionality, you can consult the [JabRef Guru](https://gurubase.io/g/jabref).
+            For questions related to the codebase, please start using [DeepWiki](https://deepwiki.com/JabRef/jabref).
+
 
             In case you encounter failing tests during development, please check our [developer FAQs](https://devdocs.jabref.org/code-howtos/faq.html)!
 
-            Having any questions or issues? Feel free to ask here on GitHub. Need help setting up your local workspace? Join the conversation on [JabRef's Gitter chat](https://gitter.im/JabRef/jabref). And don't hesitate to open a (draft) pull request early on to show the direction it is heading towards. This way, you will receive valuable feedback.
+
+            Still facing issues or having more questions?
+            Feel free to ask here on GitHub or on [JabRef's Gitter chat](https://gitter.im/JabRef/jabref).
+            Please don't hesitate to open a (draft) pull request early on to show the direction you are heading towards if unsure.
+
 
             Happy coding! 🚀
           assignment_suggestion_comment: >

.github/workflows/on-pr-opened-updated.yml

@@ -41,7 +41,7 @@ jobs:
     steps:
       - name: Create pr_number.txt
         run: echo "${{ github.event.number }}" > pr_number.txt
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@v5
         with:
           name: pr_number
           path: pr_number.txt

.github/workflows/pr-changelog.yml

@@ -73,7 +73,7 @@ jobs:
     steps:
       - name: Create pr_number.txt
         run: echo "${{ github.event.number }}" > pr_number.txt
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@v5
         with:
           name: pr_number
           path: pr_number.txt

.github/workflows/pr-comment.yml

@@ -32,7 +32,7 @@ jobs:
     steps:
       - name: Download PR number
         if: ${{ github.event_name != 'workflow_dispatch' }}
-        uses: actions/download-artifact@v5
+        uses: actions/download-artifact@v6
         continue-on-error: true
         with:
           name: pr_number

.github/workflows/pr-format.yml

@@ -139,7 +139,7 @@ jobs:
     steps:
       - name: Create pr_number.txt
         run: echo "${{ github.event.number }}" > pr_number.txt
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@v5
         with:
           name: pr_number
           path: pr_number.txt

.github/workflows/pr-modifications.yml

@@ -113,7 +113,7 @@ jobs:
     steps:
       - name: Create pr_number.txt
         run: echo "${{ github.event.number }}" > pr_number.txt
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@v5
         with:
           name: pr_number
           path: pr_number.txt

.github/workflows/tests-code.yml

@@ -35,7 +35,7 @@ jobs:
     steps:
       - name: Create pr_number.txt
         run: echo "${{ github.event.number }}" > pr_number.txt
-      - uses: actions/upload-artifact@v4
+      - uses: actions/upload-artifact@v5
         with:
           name: pr_number
           path: pr_number.txt