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JaneliaSciComp / multiview-reconstruction Public

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Modernize lazy flatfield correction code#92

Draft

minnerbe wants to merge 18 commits intozarrv3JaneliaSciComp/multiview-reconstruction:zarrv3from

experiments/lazy-correctionJaneliaSciComp/multiview-reconstruction:experiments/lazy-correctionCopy head branch name to clipboard

Conversation Commits18 (18)Checks Files changed

Draft

Modernize lazy flatfield correction code#92
minnerbe wants to merge 18 commits intozarrv3from
experiments/lazy-correction

Commits

Commits on Jan 8, 2026

Add some testing code for flat field correction
minnerbe
committed
Add viewer image loader and a test for flat field correction
minnerbe
committed
Use exising xml capabilities to orchestrate flat field correction
minnerbe
committed
Add xml capabilities for flat field correction viewer loader
minnerbe
committed
Slightly adjust coding style for readability
minnerbe
committed

Commits on Jan 9, 2026

Refactor some bright/darkfield loading code
minnerbe
committed
Use new downsampling code in correction
minnerbe
committed
Refactor bright/darkfield loading in viewer implementation
minnerbe
committed
Fix some IDE warnings
minnerbe
committed
Add a small script to convert tiffs to zarrs for testing
minnerbe
committed
First LLM-generated attempt at using N5 api for dark/flatfield IO
minnerbe
committed
Fix xml file generation in test setup
minnerbe
committed
Fix some bug in zarr conversion for testing
minnerbe
committed
Fix some IDE warnings
minnerbe
committed
Remove unnecessary array copies
minnerbe
committed
Fix some IDE warnings
minnerbe
committed
Pull out common flatfield loading code
minnerbe
committed
Use input cell size for downsampled flatfields
minnerbe
committed

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