TAtouScan v0.1.0

This is the first release of TAtouScan, a command-line tool for identifying toxin-antitoxin (TA) systems in genomes and metagenomes.

Features

• 📂 Parses GFF and FAA files
  Accepts gene annotations and protein sequences as input.

• 🔎 Annotates CDS using pyhmmer and TA HMM profiles
  Matches coding sequences against a curated set of HMM profiles representing known toxin and antitoxin families.

• 👯 Groups nearby CDS hits into TA systems
  Identifies clusters of adjacent TA-related genes based on genomic proximity.

• 📄 Exports results in a tabular format
  Outputs CDS with TA hits and associated metadata to a TSV file.

• 🛠️ Includes a CLI with arguments and options
  Provides a straightforward command-line interface for configuration and execution.