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Stop using deprecated signatures from Distances.jl #529

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Merged
merged 4 commits into from
Oct 11, 2023
Merged

Stop using deprecated signatures from Distances.jl #529

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4d237b6
Stop using deprecated signatures from Distances.jl
simsurace Oct 6, 2023
5e089e7
Delete file that is not needed
simsurace Oct 6, 2023
624f7ad
Bump version and compat
simsurace Oct 6, 2023
043bab8
Change signature of `KernelFunctions.pairwise!`
simsurace Oct 6, 2023
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4 changes: 2 additions & 2 deletions src/distances/pairwise.jl
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Original file line number Diff line number Diff line change
Expand Up @@ -21,13 +21,13 @@ function pairwise(d::PreMetric, x::AbstractVector{<:Real}, y::AbstractVector{<:R
end

function pairwise!(out::AbstractMatrix, d::PreMetric, x::AbstractVector{<:Real})
return Distances.pairwise!(out, d, reshape(x, :, 1); dims=1)
return Distances.pairwise!(d, out, reshape(x, :, 1); dims=1)
end

function pairwise!(
out::AbstractMatrix, d::PreMetric, x::AbstractVector{<:Real}, y::AbstractVector{<:Real}
)
return Distances.pairwise!(out, d, reshape(x, :, 1), reshape(y, :, 1); dims=1)
return Distances.pairwise!(d, out, reshape(x, :, 1), reshape(y, :, 1); dims=1)
end

# Also defines the colwise method for abstractvectors
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8 changes: 4 additions & 4 deletions src/utils.jl
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Expand Up @@ -108,10 +108,10 @@ function pairwise(d::PreMetric, x::ColVecs, y::AbstractVector{<:AbstractVector{<
return Distances_pairwise(d, x.X, reduce(hcat, y); dims=2)
end
function pairwise!(out::AbstractMatrix, d::PreMetric, x::ColVecs)
return Distances.pairwise!(out, d, x.X; dims=2)
return Distances.pairwise!(d, out, x.X; dims=2)
end
function pairwise!(out::AbstractMatrix, d::PreMetric, x::ColVecs, y::ColVecs)
return Distances.pairwise!(out, d, x.X, y.X; dims=2)
return Distances.pairwise!(d, out, x.X, y.X; dims=2)
end

"""
Expand Down Expand Up @@ -179,10 +179,10 @@ function pairwise(d::PreMetric, x::RowVecs, y::AbstractVector{<:AbstractVector{<
return Distances_pairwise(d, x.X, permutedims(reduce(hcat, y)); dims=1)
end
function pairwise!(out::AbstractMatrix, d::PreMetric, x::RowVecs)
return Distances.pairwise!(out, d, x.X; dims=1)
return Distances.pairwise!(d, out, x.X; dims=1)
end
function pairwise!(out::AbstractMatrix, d::PreMetric, x::RowVecs, y::RowVecs)
return Distances.pairwise!(out, d, x.X, y.X; dims=1)
return Distances.pairwise!(d, out, x.X, y.X; dims=1)
end

# Resolve ambiguity error for ColVecs vs RowVecs. #346
Expand Down