Added documenterVitepress support

.github/workflows/Documenter.yml

@@ -0,0 +1,53 @@
+name: Documenter
+
+on:
+  push:
+    branches:
+      - main
+    tags: ['*']
+  pull_request:
+  workflow_dispatch:
+
+permissions:
+  contents: write
+  pages: write
+  id-token: write
+  statuses: write
+
+concurrency:
+  group: pages
+  cancel-in-progress: false
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Setup Julia
+        uses: julia-actions/setup-julia@v1
+        with:
+          version: '1.10'
+
+      - name: Load Julia packages from cache
+        id: julia-cache
+        uses: julia-actions/cache@v2
+
+      - name: Build and deploy docs
+        uses: julia-actions/julia-docdeploy@v1
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
+          GKSwstype: "100"
+          JULIA_DEBUG: "Documenter"
+          DATADEPS_ALWAYS_ACCEPT: true
+
+      - name: Save Julia depot cache on cancel or failure
+        id: julia-cache-save
+        if: cancelled() || failure()
+        uses: actions/cache/save@v4
+        with: 
+          path: |
+            ${{ steps.julia-cache.outputs.cache-paths }}
+          key: ${{ steps.julia-cache.outputs.cache-key }}

.github/workflows/TagBot.yml

@@ -0,0 +1,31 @@
+name: TagBot
+on:
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+    inputs:
+      lookback:
+        default: 3
+permissions:
+  actions: read
+  checks: read
+  contents: write
+  deployments: read
+  issues: read
+  discussions: read
+  packages: read
+  pages: read
+  pull-requests: read
+  repository-projects: read
+  security-events: read
+  statuses: read
+jobs:
+  TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}

Project.toml

@@ -31,8 +31,6 @@ Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 ColorTypes = ">=0.11.4"
 DataTypesBasic = ">=2.0.3"
 Dictionaries = ">=0.3.25"
-Documenter = "1"
-DocumenterVitepress = "0.0.19, 0.0.20"
 FreeType = ">=4.1.0"
 FreeTypeAbstraction = ">=0.10.0"
 GLFW = ">=3.4.1"

docs/Project.toml

@@ -1,4 +1,3 @@
 [deps]
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 DocumenterVitepress = "4710194d-e776-4893-9690-8d956a29c365"
-Rocket = "df971d30-c9d6-4b37-b8ff-e965b2cb3a40"

docs/make.jl

@@ -1,38 +1,32 @@
-using Pkg
-Pkg.add([
-    "Documenter",
-    "DocumenterVitepress",
-    "Rocket"
-])
-using MedEye3d
-using Rocket
-using Documenter
-using DocumenterVitepress
+using Documenter, DocumenterVitepress
 
-
-DocMeta.setdocmeta!(MedEye3d, :DocTestSetup, :(using MedEye3d); recursive=true)
-
-makedocs(;
-    modules=[MedEye3d, MedEye3d.SegmentationDisplay, MedEye3d.ReactingToInput, MedEye3d.ReactOnKeyboard, MedEye3d.ReactOnMouseClickAndDrag, MedEye3d.ReactToScroll, MedEye3d.PrepareWindow, MedEye3d.TextureManag, MedEye3d.DisplayWords, MedEye3d.Uniforms, MedEye3d.ShadersAndVerticiesForText, MedEye3d.ShadersAndVerticies, MedEye3d.OpenGLDisplayUtils, MedEye3d.CustomFragShad, MedEye3d.PrepareWindowHelpers, MedEye3d.StructsManag, MedEye3d.ForDisplayStructs, MedEye3d.DataStructs, MedEye3d.BasicStructs, MedEye3d.ModernGlUtil
-        # ,MedEye3d.MaskDiffrence
-        , MedEye3d.KeyboardVisibility, MedEye3d.OtherKeyboardActions, MedEye3d.KeyboardMouseHelper, MedEye3d.WindowControll, MedEye3d.ChangePlane],
-    repo=Remotes.GitHub("JuliaHealth", "MedEye3d.jl"),
-    authors="Jakub-Mitura <jakubmitura14@gmail.com>, Divyansh-Goyal <divital2004@gmail.com> and contributors",
-    sitename="MedEye3d.jl",
+makedocs(; 
+    sitename = "MedEye3d.jl", 
+    authors = "Jakub Mitura <jakub.mitura14@gmail>, Beata E. Chrapko and Divyansh Goyal <divital2004@gmail.com>",
     format=DocumenterVitepress.MarkdownVitepress(
-        repo="https://github.com/JuliaHealth/MedEye3d.jl",
+        repo = "github.com/JuliaHealth/MedEye3d.jl", 
+        devbranch = "master",
+        devurl = "dev",
     ),
+    warnonly = true,
+    draft = false,
+    source = "src",
+    build = "build",
     pages=[
-        "Home" => "index.md",
-        "Tutorials" => "tutorials.md",
-        "Contributing" => "contributing.md"
-    ],
+        "Manual" => [
+            "Get Started" => "manual/get_started.md",
+            "Code" => "manual/code_example.md"
+        ],
+        "Developers' documentation" => [
+            "Visualization Playbook" => "devs/playbook.md"
+        ],
+        "api" => "api.md"
+        ],
 )
 
-deploydocs(;
-    repo="github.com/JuliaHealth/MedEye3d.jl",
-    target="build", # this is where Vitepress stores its output
-    devbranch="master",
-    branch="gh-pages",
-    push_preview=true
+# This is the critical part that creates the version structure
+DocumenterVitepress.deploydocs(;
+    repo = "github.com/JuliaHealth/MedImages.jl", 
+    devbranch = "master",
+    push_preview = true,
 )

docs/package.json

@@ -1,17 +1,15 @@
 {
-  "devDependencies": {
-    "markdown-it": "^14.1.0",
-    "markdown-it-mathjax3": "^4.3.2",
-    "vitepress": "^1.0.2",
-    "vitepress-plugin-tabs": "^0.5.0"
-  },
   "scripts": {
     "docs:dev": "vitepress dev build/.documenter",
     "docs:build": "vitepress build build/.documenter",
     "docs:preview": "vitepress preview build/.documenter"
   },
   "dependencies": {
-    "@shikijs/transformers": "^1.1.7",
-    "markdown-it-footnote": "^4.0.0"
+    "@nolebase/vitepress-plugin-enhanced-readabilities": "^2.14.0",
+    "markdown-it": "^14.1.0",
+    "markdown-it-footnote": "^4.0.0",
+    "markdown-it-mathjax3": "^4.3.2",
+    "vitepress": "^1.6.3",
+    "vitepress-plugin-tabs": "^0.6.0"
   }
 }

docs/src/.vitepress/config.mts

@@ -0,0 +1,98 @@
+import { defineConfig } from 'vitepress'
+import { tabsMarkdownPlugin } from 'vitepress-plugin-tabs'
+import mathjax3 from "markdown-it-mathjax3";
+import footnote from "markdown-it-footnote";
+import path from 'path'
+
+function getBaseRepository(base: string): string {
+  if (!base || base === '/') return '/';
+  const parts = base.split('/').filter(Boolean);
+  return parts.length > 0 ? `/${parts[0]}/` : '/';
+}
+
+const baseTemp = {
+  base: 'REPLACE_ME_DOCUMENTER_VITEPRESS',// TODO: replace this in makedocs!
+}
+
+const navTemp = {
+  nav: 'REPLACE_ME_DOCUMENTER_VITEPRESS',
+}
+
+const nav = [
+  ...navTemp.nav,
+  {
+    component: 'VersionPicker'
+  }
+]
+
+// https://vitepress.dev/reference/site-config
+export default defineConfig({
+  base: 'REPLACE_ME_DOCUMENTER_VITEPRESS',// TODO: replace this in makedocs!
+  title: 'REPLACE_ME_DOCUMENTER_VITEPRESS',
+  description: 'REPLACE_ME_DOCUMENTER_VITEPRESS',
+  lastUpdated: true,
+  cleanUrls: true,
+  outDir: 'REPLACE_ME_DOCUMENTER_VITEPRESS', // This is required for MarkdownVitepress to work correctly...
+  head: [
+    ['link', { rel: 'icon', href: 'REPLACE_ME_DOCUMENTER_VITEPRESS_FAVICON' }],
+    ['script', {src: `${getBaseRepository(baseTemp.base)}versions.js`}],
+    // ['script', {src: '/versions.js'], for custom domains, I guess if deploy_url is available.
+    ['script', {src: `${baseTemp.base}siteinfo.js`}]
+  ],
+
+  vite: {
+    define: {
+      __DEPLOY_ABSPATH__: JSON.stringify('REPLACE_ME_DOCUMENTER_VITEPRESS_DEPLOY_ABSPATH'),
+    },
+    resolve: {
+      alias: {
+        '@': path.resolve(__dirname, '../components')
+      }
+    },
+    optimizeDeps: {
+      exclude: [ 
+        '@nolebase/vitepress-plugin-enhanced-readabilities/client',
+        'vitepress',
+        '@nolebase/ui',
+      ], 
+    }, 
+    ssr: { 
+      noExternal: [ 
+        // If there are other packages that need to be processed by Vite, you can add them here.
+        '@nolebase/vitepress-plugin-enhanced-readabilities',
+        '@nolebase/ui',
+      ], 
+    },
+  },
+  markdown: {
+    math: true,
+    config(md) {
+      md.use(tabsMarkdownPlugin),
+      md.use(mathjax3),
+      md.use(footnote)
+    },
+    theme: {
+      light: "github-light",
+      dark: "github-dark"}
+  },
+  themeConfig: {
+    outline: 'deep',
+    logo: 'REPLACE_ME_DOCUMENTER_VITEPRESS',
+    search: {
+      provider: 'local',
+      options: {
+        detailedView: true
+      }
+    },
+    nav,
+    sidebar: 'REPLACE_ME_DOCUMENTER_VITEPRESS',
+    editLink: 'REPLACE_ME_DOCUMENTER_VITEPRESS',
+    socialLinks: [
+      { icon: 'github', link: 'REPLACE_ME_DOCUMENTER_VITEPRESS' }
+    ],
+    footer: {
+      message: 'Made with <a href="https://luxdl.github.io/DocumenterVitepress.jl/dev/" target="_blank"><strong>DocumenterVitepress.jl</strong></a><br>',
+      copyright: `© Copyright ${new Date().getUTCFullYear()}.`
+    }
+  }
+})