GitHub - Kalan-Lab/Townsend_etal_StillNotSterile: Code for data analysis and figures for the manuscript "Still Not Sterile: Chlorhexidine gluconate does not completely reduce skin microbial bioburden and promotes pathogen overabundance in patients undergoing elective surgeries" by E.C. Townsend et al.

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 14 Commits
MAASLIN		MAASLIN
AllForearmResultsFIN.csv		AllForearmResultsFIN.csv
BrayCHANGE_fromRespectiveViableCSS_BASELINE.csv		BrayCHANGE_fromRespectiveViableCSS_BASELINE.csv
CHG-CFU-DF.csv		CHG-CFU-DF.csv
CHG_StaphBlast_Merged_pivot.csv		CHG_StaphBlast_Merged_pivot.csv
CHG_Study_Rcode.R		CHG_Study_Rcode.R
CHGsilva_RelativeOUT.genus.csv		CHGsilva_RelativeOUT.genus.csv
CHGstudy_qPCR_df.csv		CHGstudy_qPCR_df.csv
Concatenated_Results_KMA.csv.zip		Concatenated_Results_KMA.csv.zip
ECT-multipleBodyPMAxx.csv		ECT-multipleBodyPMAxx.csv
FollowUP_to_SELF_ELSE_baseline.csv		FollowUP_to_SELF_ELSE_baseline.csv
LK16S009_CHG_Study_Manufest_Server_HealthData.txt		LK16S009_CHG_Study_Manufest_Server_HealthData.txt
LK16S011_CHG_Study_Manufest_Server_HealthData.txt		LK16S011_CHG_Study_Manufest_Server_HealthData.txt
LKMB002_Metadata_UPDATED.csv		LKMB002_Metadata_UPDATED.csv
PathBlast.csv		PathBlast.csv
StaphSpeciesBLAST.csv		StaphSpeciesBLAST.csv
table-CHGstudyPart1-dada2.qza		table-CHGstudyPart1-dada2.qza
table-CHGstudyPart2-dada2.qza		table-CHGstudyPart2-dada2.qza
taxonomy-Silva2022-CHGstudyPart1.qza		taxonomy-Silva2022-CHGstudyPart1.qza
taxonomy-Silva2022-CHGstudyPart2.qza		taxonomy-Silva2022-CHGstudyPart2.qza

About

Code for data analysis and figures for the manuscript "Still Not Sterile: Chlorhexidine gluconate does not completely reduce skin microbial bioburden and promotes pathogen overabundance in patients undergoing elective surgeries" by E.C. Townsend et al.