Scripts to reproduce the figures of https://doi.org/10.1101/2025.03.31.646464

For more details on SMF data pre-processing and analysis, refer to our previosuly published protocol paper at https://doi.org/10.1038/s41596-021-00630-1 and to this vignette from our R/Bioconductor package https://bioconductor.org/packages/release/bioc/vignettes/SingleMoleculeFootprinting/inst/doc/methylation_calling_and_QCs.html.