Codebase for "Beta cell-derived cholecystokinin drives obesity-associated pancreatic adenocarcinoma development"

System requirements

Python 3.8.18 on any operating system with no non-standard software required.

Installation guide (typical installation time: ~5-10 minutes)

Install graphtools 1.5.3, tensorflow 2.13.0, keras 2.13.1, numpy 1.22.4, scikit-learn 1.3.2, scipy 1.10.1, tqdm 4.66.4, scanpy 1.9.3, phate 1.0.11, magic 3.0.0, TrajectoryNet 0.2.4, scMMGAN 0.0

Instructions for use

Each folder contains Python scripts and notebooks pertaining to analysis related to each figure for reproducibility. Small data files, figures, and results files included, and large data files available upon request.