Martini 3 parameters for Plant membranes
The sugars and linker are parameterized from two sets of atomistic simulations. For the un-saturated til version (18:1/24:0) some building block assumptions are taken in the angles and bonds, since there is no atomistic parameters avaliable for this
The parameters for the sugars are in the GIPC_Sugars folder. There are plots of the bonded parameters and SASA. The notebook contains the mapping of the sugars as well.
For the linker region, since this is a bit special, CER6 is simulated and the linker region is mapped from here. The parameters for this is in the CER6 folder, again with plots of the various bonded parameters and SASA.
The tails are taken from the DEV18 phosphorlipids.
For mapping look at the google slides and docs here:
https://docs.google.com/presentation/d/1dvn60o3jajnx825XB2j82uiEP_hOg54AotUVwtxJbHw/edit#slide=id.p
https://docs.google.com/document/d/1oh55_xnt_g1GMyi71NYiGKAMZxxZCNGjpqi_QWqyazk/edit?tab=t.0