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…col: 1 step for cenre poke
…ted training stages, renamed overall performance section to sessionperformance with some added data to be tracked over sessions and among others
…lation from SMA to ParamsSection
… stage for running session with user setting.
…ser action. Need to remove the changes in stage 1.
…f runtime error of same name of varivale and function
…ted a new file for loading the automated training.
… ExperPort cleanup effort to better organize deprecated protocols
…de to legacy Moved olfactory-related analysis code and protocols to their respective legacy folders: Analysis/legacy/: - Odor_Segm/ - Odor2AFC/ - NL2AFC_MIX/ - state_colors_olf.m Protocols/legacy/: - @gf2afcobj (uses OdorNames.mat) Other related protocols (@odorsegm2obj, @odorsegm3obj, @odorsegmobj, @adil2afcobj) were already in legacy from previous olfip.mat related moves. This change helps organize deprecated olfactory-related code while preserving it for reference. The .mat files themselves remain in place as they may be needed by other components.
Moved two categories of files to ExperPort/legacy: 1. Confirmed unused files: - start_script.m - beginit.m - remove_protocol_preferences.m - reporter.m - RPbox_realbox.m - ExperRPBox.m - ExperStart.m - ExperValveCheck.m 2. Files requiring further investigation: - end_script.m - RExper.m These files have no direct references in the active codebase or have limited/indirect usage. Moving them to legacy preserves the code while cleaning up the main directory. Files requiring investigation will be analyzed further before any potential removal.
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Moved the following .mat files to the ExperPort/legacy directory: - olfip.mat - bgnames.mat - OdorNames.mat - OdorSet.mat This completes the previous refactoring efforts where we moved the protocols and analysis code that depend on these files to legacy folders (commits 1c8b5d7, b714b18). The .mat files were initially kept in place to prevent potential disruption, but after verification that no active code depends on them, they are now properly moved to the legacy directory. This change improves the organization of the codebase by ensuring all deprecated olfactory-related components are consistently stored in legacy folders.
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Description
This PR integrates:
2_step_soundcat_arpitjunk-removalmainto ensure no regressionsThis replaces and extends #17 , which has been closed to consolidate all work in one clean integration branch.
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Checklist
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