Convert bin expression matrix into bin1 data
- python3.6.5+
| Package | Version | Description |
|---|---|---|
| pandas | <=1.0.1 | handle dataframe |
| numpy | 1.19.1 | |
| scipy | 1.5.2 | generate sparse matrix |
| opencv | 4.4.0 | Process image |
from ConverBinData import ConvertBinData
binSize = 10
convert = ConvertBinData()
mergedf = convert.ConvertData(partfile, genefile, binSize)
Required parameters:
- partfile: Downloaded bin gene expression file.
- genefile: The complete bin1 gene expression file.
- binSize: The binsize of your downloaded bin gene expression file. (Cannot larger than 50.)