Global or local whitening/normalization for refine_template#103

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jdickerson95 wants to merge 40 commits intodevelopment_v1.2from

mdg_global_whitening

Commits on Oct 10, 2025

feat: Add option to apply global filtering before particle extraction
mgiammar
committed

Commits on Oct 14, 2025

Commits on Nov 5, 2025

refactored so global and local is now fully that, no mixed filtering
jdickerson95
committed

Commits on Nov 7, 2025

Commits on Nov 9, 2025

Commits on Nov 11, 2025

feat: differentiable refine added
jdickerson95
committed

Commits on Nov 21, 2025

differentiable refine working for motion polishing
jdickerson95
committed

Commits on Nov 22, 2025

Commits on Dec 15, 2025

fix: bug when nothing provided
jdickerson95
committed

Commits on Dec 29, 2025

Commits on Jan 3, 2026

fix: refine runs if no values for aberrations in df
jdickerson95
committed

Commits on Jan 7, 2026

Commits on Jan 9, 2026

Refactor from code review
jdickerson95
committed

Commits on Jan 11, 2026

Commits on Jan 16, 2026

Can use particle shifts directly to get particle stacks from movie
jdickerson95
committed

Commits on Feb 5, 2026

Commits on Feb 6, 2026