v1.1.1

What's Changed

• ci(dependabot): bump actions/checkout from 5 to 6 by @dependabot[bot] in #107
• fix: Update breaking change in torch-fourier-slice by @jdickerson95 in #111

Full Changelog: v1.1...v1.1.1

v1.1

What's Changed

• docs: add pre-print link to README.md by @mgiammar in #78
• torch.compile updates for speed and stability by @mgiammar in #74
• Update v1.1 development with main by @mgiammar in #80
• Distribute work over multiple GPUs with a shared work queue by @mgiammar in #81
• Mdg match template test by @mgiammar in #82
• Update mt unit test by @mgiammar in #87
• feat: use global search index for stat tracking by @mgiammar in #88
• ci(dependabot): bump actions/setup-python from 5 to 6 by @dependabot[bot] in #91
• fix: convert fp16 images/volumes to fp32 by @jdickerson95 in #93
• fix: ensure filters correct dtype if not enabled by @jdickerson95 in #95
• Speed up cross-correlation step by decomposed 2D FFT by @mgiammar in #90
• Add multi-node scaling for match template program by @mgiammar in #94
• fix: refine pos update uses refine if present by @jdickerson95 in #97
• Allow choice of streamed or batched backend for match template by @jdickerson95 in #98
• More explicit updates in pixel size for paper by @jdickerson95 in #100
• Backend updates for v1.1 release by @mgiammar in #86

Full Changelog: v1.0...v1.1

v1.0

What's Changed

• Automatic Python API generation for package by @mgiammar in #43
• Update docs_main branch with main branch by @mgiammar in #62
• fix: Add proper stream synchronization in backend to prevent edge case by @mgiammar in #71
• ci(dependabot): bump actions/checkout from 4 to 5 by @dependabot[bot] in #70
• fix: constrained search can now run on match template data by @jdickerson95 in #66
• Resolve un-freed, shared CUDA tensor error by @mgiammar in #72
• Update main with current documentation by @mgiammar in #73
• Add introductory documentation example by @mgiammar in #76
• Merge documentation branch ahead of v1.0 release by @mgiammar in #77

Full Changelog: v0.0.10alpha...v1.0

v0.0.10alpha

What's Changed

• Bugfix: Projection normalization sometimes returns NaN due to zero variance by @jdickerson95 in #67
• Sync minor test and linting updates upstream by @mgiammar in #68

Full Changelog: v0.0.9alpha...v0.0.10alpha

v0.0.9alpha

What's Changed

• calc b_factor env separately to ctf by @jdickerson95 in #63

Full Changelog: v0.0.8alpha...v0.0.9alpha

v0.0.8alpha

What's Changed

• Use "top-left" reference position as default for refine_template and constrained_search bugfix by @mgiammar in #53
• Bugfix for small number of particles in refine template by @mgiammar in #55
• Update match_template backend to use concurrent streams rather than batched tensor operations by @mgiammar in #56
• Make position reference "top-left" consistent between the extracted image boxes and statistics by @mgiammar in #61
• Add back batched cross-correlation for refine_template program by @mgiammar in #59

Full Changelog: v0.0.7alpha...v0.0.8alpha

v0.0.7alpha

What's Changed

• Use the zenodo-get package for file downloads by @mgiammar in #48
• ci(dependabot): bump actions/setup-python from 3 to 5 by @dependabot in #49
• Allow multiple angular ranges to be specified by @jdickerson95 in #50
• Update ttsim3d version and match device handling behavior by @mgiammar in #51

New Contributors

• @dependabot made their first contribution in #49

Full Changelog: v0.0.6alpha...v0.0.7alpha

v0.0.6alpha

What's Changed

• README documentation links and example scripts by @mgiammar in #23
• Reorganize managers by @jdickerson95 in #24
• Create pylint.yml by @mgiammar in #13
• org: group pydantic models into subfolders based on type by @mgiammar in #28
• refined_rel vs rel defocus now handled by particle stack by @jdickerson95 in #29
• feat: add new p-value metric for extracting peaks by @mgiammar in #30
• roll axis search by @jdickerson95 in #31
• Constrained search by @jdickerson95 in #25
• fix: Scale mip based on mrc file in refine in case of large peak shift by @jdickerson95 in #21
• Remove duplicate ci.yml file for duplicate tests by @mgiammar in #32
• fix: updates for new fourier-slice version by @jdickerson95 in #38
• Fixed normalization for non-square images by @sharhar in #36
• fix: prevent particles on edge refining to inf by @jdickerson95 in #40
• Improving documentation for implemented programs by @mgiammar in #22
• Update docs_main branch with main by @mgiammar in #41
• feat: add functions for GEV fitting by @mgiammar in #35
• feat: Add rough reprojection example by @mgiammar in #34
• Increment documentation and code for v0.0.6alpha by @mgiammar in #45

New Contributors

• @sharhar made their first contribution in #36

Full Changelog: v0.0.5alpha...v0.0.6alpha

v0.0.5alpha

What's Changed

• Multi-gpu refine by @jdickerson95 in #18
• Resolve a circular import error by @mgiammar in #20

Full Changelog: v0.0.4alpha...v0.0.5alpha

v0.0.4alpha

What's Changed

• Pixel size search functionality by @jdickerson95 in #16
• Update match_template_example_config.yaml by @jdickerson95 in #14
• fix: add minimum requirements for tt* dependencies by @mgiammar in #19

New Contributors

• @jdickerson95 made their first contribution in #16

Full Changelog: v0.0.3alpha...v0.0.4alpha