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Homebrew formula #1024
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b60f27c
feat: Add Homebrew and Spack package definitions
sbryngelson 007e05e
chore: Remove Spack files (Homebrew-only branch)
sbryngelson 95097c9
docs: Consolidate Homebrew documentation into single file
sbryngelson edfc8fe
chore: Remove non-Homebrew documentation files
sbryngelson c1b5453
chore: Remove README/CITATION changes and issue templates
sbryngelson e34711d
refactor: Move Homebrew files to packaging/homebrew/ directory
sbryngelson 6ee36b7
docs: Update README to match latest upstream version
sbryngelson 0839de6
Merge branch 'MFlowCode:master' into homebrew-formula
sbryngelson d1ccc91
fix: Address PR review feedback for Homebrew formula
sbryngelson 312a0ff
refactor: Implement all PR review suggestions for Homebrew formula
sbryngelson 1b80a46
fix: Address Copilot PR review comments
sbryngelson ac0b77a
fix up
sbryngelson 62310af
docs: Address final Copilot review suggestions
sbryngelson 34ef2bd
fix: Implement qodo-merge-pro safety improvements
sbryngelson 90df696
ci: Add Homebrew formula testing workflow
sbryngelson b83729b
fix: Address all Homebrew style violations
sbryngelson 120b3a3
fix
sbryngelson 8b91e40
fix?
sbryngelson d305435
fix
sbryngelson f45fa47
Fix Homebrew CI: use local tap for formula installation
sbryngelson faa1807
Restore bug_report.md from master branch
sbryngelson 1b72214
Fix Homebrew formula: handle hashed installation directory
sbryngelson 9a840ec
Fix: Find each binary individually in separate hashed directories
sbryngelson a0f4293
Simplify Homebrew formula to install binaries only
sbryngelson af2cc33
push
sbryngelson e335fcb
Fix test: Don't run binaries with -h flag
sbryngelson 48fe8f5
Fix Homebrew style: Use assert_path_exists instead of assert_predicat…
sbryngelson 1df4901
Install full MFC toolchain with smart wrapper for read-only Cellar
sbryngelson 2152b36
Fix formula test: Don't trigger Python venv setup
sbryngelson 0971f4f
Add Cantera dependency and pre-install Python venv
sbryngelson c0dbe80
Build Cantera 3.1.0 from source instead of PyPI
sbryngelson 23337c1
Complete Cantera 3.1.0 source build implementation
sbryngelson 5bd664c
Fix trailing whitespace errors in Homebrew formula
sbryngelson 26204da
Fix Cantera resource: remove incorrect revision hash
sbryngelson c0168b7
Fix unnecessary spacing in Cantera resource definition
sbryngelson 487b88f
Fix: Build Cantera before MFC to avoid PyPI dependency error
sbryngelson 822a045
Fix Homebrew style: Use ENV.fetch instead of ENV[]
sbryngelson 8c381b1
Add packaging module to Cantera build dependencies
sbryngelson 88521cb
Fix: Run scons via venv Python to find packaging module
sbryngelson 8efd560
Remove scons from Homebrew dependencies
sbryngelson a648a59
Fix Cantera build: Pass compiler and SDK paths to scons
sbryngelson 9b76a24
Fix: Pass compiler flags as environment variables, not scons args
sbryngelson 9823cfe
Fix hash alignment for Homebrew style check
sbryngelson 00f9d63
Add verbose logging and artifacts to Homebrew CI
sbryngelson 5564cd6
Fix brew test version check by committing formula to tap
sbryngelson 56083b9
Fix: Modify ENV directly instead of passing hash to system
sbryngelson 2145319
Replace brew test with direct test commands
sbryngelson 2089f3c
Pass compiler flags directly to scons as build arguments
sbryngelson e5e5947
Fix trailing whitespace on line 45
sbryngelson 74178b6
Fix test: use formula-specific prefix for libexec check
sbryngelson f392a7d
Fix Cantera build: Set ENV vars and explicit compilers for scons
sbryngelson 73cd91e
Fix trailing whitespace on lines 44 and 51
sbryngelson 9a9e93f
Fix TypeError: Set SDKROOT in ENV instead of passing hash to system
sbryngelson 82cd3f4
Add SDK C++ include path to scons extra_inc_dirs
sbryngelson 62a1550
Pass compiler flags as scons variables for configure checks
sbryngelson 5483722
Fix RuboCop: Use ENV.fetch instead of ENV[] for compiler flags
sbryngelson acb0441
Fix Cantera scons: Use cc_flags/cxx_flags instead of CCFLAGS/CXXFLAGS
sbryngelson 6837356
Add C++ include path directly to cxx_flags for scons checks
sbryngelson b41fcbc
Add SDK main include path to compiler flags for C header access
sbryngelson ee8d3e0
Add Cantera config.log capture to CI for debugging
sbryngelson 9540c07
Fix CI: Add pipefail to catch brew install failures
sbryngelson d0bb8c9
Add config.log output on Cantera build failure
sbryngelson dde2442
Fix RuboCop style: remove trailing whitespace and shorten long line
sbryngelson 086c239
Improve config.log capture: search recursively and list directory con…
sbryngelson 8767c6c
Fix RuboCop: remove trailing whitespace on lines 87 and 99
sbryngelson 90fe111
Enhance debug output: use opoo, check multiple config.log locations, …
sbryngelson feb36b1
Remove Cantera from formula - make it an optional user-installed depe…
sbryngelson 03f9364
Install Cantera from PyPI instead of building from source
sbryngelson 97bab16
Fix RuboCop: use assert_path_exists instead of assert_predicate with …
sbryngelson 9d790c8
Fix mfc.sh build: ensure we're in buildpath directory
sbryngelson fa96ac4
Add debug output to diagnose mfc.sh directory issue
sbryngelson 4b8f094
Fix trailing whitespace in formula
sbryngelson 6235b8a
Fix mfc.sh build: keep toolchain in buildpath during build
sbryngelson eef778c
Fix mfc wrapper script: add toolchain symlink and build directory
sbryngelson 9a4eb8b
Fix Homebrew formula: copy directories instead of symlinking to avoid…
sbryngelson df418b0
Fix Homebrew formula: ensure fresh venv on each install
sbryngelson 3bc9854
Fix CI: handle Homebrew dylib fixup warnings gracefully
sbryngelson 73d1623
Fix CI: remove invalid mfc count test
sbryngelson 9b8b345
Fix CI: use absolute path for test case file
sbryngelson ac6248f
Remove 'mfc run' test from CI and clarify Homebrew limitations
sbryngelson 3b6b988
Enable 'mfc run' by patching toolchain to use Homebrew binaries
sbryngelson 691db62
Fix mfc run: patch toolchain to skip building and use Homebrew binaries
sbryngelson 9c783b1
Fix wrapper script creation and permissions
sbryngelson dd49604
Fix executable permissions with post_install hook
sbryngelson e7373e6
Fix CI: use absolute path for case.py in mfc run test
sbryngelson 0ffea8f
docs
sbryngelson 37614f3
docs
sbryngelson 4127e3f
cleanup
sbryngelson d659884
harden
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,217 @@ | ||
| # MFC Homebrew Formula | ||
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| This document describes the Homebrew formula for installing MFC on macOS systems. | ||
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| ## Overview | ||
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| The Homebrew formula enables one-command installation of MFC on macOS (both Intel and Apple Silicon). The formula handles all dependencies, builds the three main MFC binaries, and installs them in a standard Homebrew location. | ||
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| ## What Gets Installed | ||
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| When users run `brew install mfc`, they get: | ||
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| ### Binaries | ||
| - `pre_process` - Preprocessing binary for setting up initial conditions | ||
| - `simulation` - Main simulation binary for computational fluid dynamics | ||
| - `post_process` - Post-processing binary for analyzing results | ||
| - `mfc` - Wrapper script that provides the full MFC interface | ||
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| ### Additional Components | ||
| - Python toolchain in `/usr/local/Cellar/mfc/VERSION/toolchain/` | ||
| - Example cases in `/usr/local/Cellar/mfc/VERSION/share/mfc/examples/` | ||
| - Documentation references and usage information | ||
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| ## Formula Structure | ||
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| ### Dependencies | ||
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| Build-time dependencies (only needed during installation): | ||
| - cmake - Build system generator | ||
| - gcc - GNU Compiler Collection (provides gfortran) | ||
| - [email protected] - Python 3.12 for build scripts | ||
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| Runtime dependencies (needed to run MFC): | ||
| - boost - C++ libraries | ||
| - fftw - Fast Fourier Transform library | ||
| - hdf5 - Hierarchical Data Format 5 for data storage | ||
| - open-mpi - Message Passing Interface for parallel computing | ||
| - openblas - Optimized BLAS library | ||
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| ### Build Process | ||
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| The formula executes the following steps during installation: | ||
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| 1. Sets up environment variables for compilers and libraries | ||
| 2. Runs `./mfc.sh build` to compile all three binaries | ||
| 3. Installs binaries to Homebrew's bin directory | ||
| 4. Creates a wrapper script that sets up the environment | ||
| 5. Installs Python toolchain and examples | ||
|
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| ### Environment Configuration | ||
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| The formula ensures proper environment setup: | ||
| - BOOST_INCLUDE points to Homebrew's boost installation | ||
| - FC (Fortran compiler) is set to gfortran | ||
| - CC (C compiler) is set to gcc | ||
| - CXX (C++ compiler) is set to g++ | ||
|
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| ### Wrapper Script | ||
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| The installed `mfc` wrapper provides the complete MFC interface. It automatically configures the environment and delegates to the main `mfc.sh` script. Users can run any MFC command through this wrapper: | ||
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| ``` | ||
| mfc build | ||
| mfc run examples/case.py | ||
| mfc test | ||
| mfc clean | ||
| ``` | ||
|
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| ## Installation Methods | ||
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| ### Standard Installation | ||
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| Users install MFC with: | ||
| ``` | ||
| brew install mfc | ||
| ``` | ||
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| This fetches the source tarball from GitHub releases, verifies the checksum, and builds from source. | ||
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| ### Development Installation | ||
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| For the latest development version: | ||
| ``` | ||
| brew install --HEAD mfc | ||
| ``` | ||
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| This clones from the master branch instead of using a release tarball. | ||
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| ## Testing | ||
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| The formula includes automated tests that verify: | ||
| - All three binary files exist after installation | ||
| - The mfc wrapper script is functional | ||
| - The help command executes without errors | ||
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| These tests run automatically during `brew install` and can be run manually with `brew test mfc`. | ||
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| ## Post-Installation | ||
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| After installation completes, Homebrew displays usage information including: | ||
| - Locations of installed binaries | ||
| - Path to example cases | ||
| - Example command to run a simulation | ||
| - Link to full documentation | ||
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| ## Usage Examples | ||
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| Once installed, users can immediately start using MFC: | ||
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| ```bash | ||
| # Run a test case | ||
| mfc run /usr/local/share/mfc/examples/1D_sodshocktube/case.py | ||
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| # Run just preprocessing | ||
| pre_process -i input.dat | ||
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| # Run simulation | ||
| simulation -i input.dat | ||
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| # Post-process results | ||
| post_process -i input.dat | ||
| ``` | ||
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| ## Distribution | ||
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| The formula can be distributed in two ways: | ||
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| ### Official Homebrew Repository | ||
| Submit a pull request to homebrew-core for inclusion in the main Homebrew repository. This requires: | ||
| - Stable release with version tag | ||
| - Verified tarball checksum | ||
| - Formula code review | ||
| - Automated testing passes | ||
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| ### Third-Party Tap | ||
| Create a separate tap (custom repository) for immediate availability: | ||
| ``` | ||
| brew tap organization/mfc | ||
| brew install organization/mfc/mfc | ||
| ``` | ||
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| This allows distribution before official Homebrew acceptance. | ||
|
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| ## Platform Support | ||
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| The formula supports: | ||
| - macOS 11 (Big Sur) and later | ||
| - Intel x86_64 processors | ||
| - Apple Silicon (ARM64) processors | ||
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| Homebrew automatically selects the appropriate compiler flags and optimization settings for each architecture. | ||
|
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| ## Updates and Versioning | ||
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| When a new MFC version is released, the formula must be updated. To update to a new version: | ||
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| 1. Change the version number in the URL | ||
| 2. Download the new tarball | ||
| 3. Calculate new SHA256 checksum | ||
| 4. Update the sha256 line in the formula | ||
| 5. Test the installation | ||
| 6. Submit updated formula | ||
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| ## Technical Details | ||
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| ### Source URL | ||
| The formula downloads from GitHub releases using the version tag specified in the formula (e.g., v5.1.0): | ||
| ``` | ||
| https://github.com/MFlowCode/MFC/archive/refs/tags/vVERSION.tar.gz | ||
| ``` | ||
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| ### Checksum Verification | ||
| The formula includes a SHA256 checksum that must match the downloaded tarball. This ensures: | ||
| - The downloaded source matches the expected file exactly | ||
| - No corruption occurred during download | ||
| - Authenticity of the release | ||
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| Maintainers must update this checksum when releasing new versions. | ||
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| ### Build Parallelization | ||
| The formula uses all available CPU cores for building (`ENV.make_jobs`) to minimize compilation time. | ||
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| ### Installation Prefix | ||
| Files install to the standard Homebrew prefix: | ||
| - Binaries: `/usr/local/bin/` (Intel) or `/opt/homebrew/bin/` (Apple Silicon) | ||
| - Data: `/usr/local/share/mfc/` or `/opt/homebrew/share/mfc/` | ||
| - Toolchain: `/usr/local/Cellar/mfc/VERSION/` or `/opt/homebrew/Cellar/mfc/VERSION/` | ||
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| ## Advantages Over Manual Installation | ||
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| Users benefit from Homebrew installation: | ||
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| 1. Automatic dependency management - Homebrew installs all required libraries | ||
| 2. Pre-compiled binaries - On some systems, bottles (binary packages) may be available | ||
| 3. Easy updates - `brew upgrade mfc` gets the latest version | ||
| 4. Clean uninstallation - `brew uninstall mfc` removes everything | ||
| 5. Standard paths - Binaries are automatically in PATH | ||
| 6. Version management - Multiple versions can coexist if needed | ||
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| ## Maintenance | ||
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| The formula requires minimal maintenance once accepted: | ||
| - Update version and checksum when new releases are published | ||
| - Adjust dependencies if MFC requirements change | ||
| - Update minimum macOS version if newer features are needed | ||
| - Monitor for deprecated Homebrew APIs and update accordingly | ||
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| ## Validation | ||
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| The formula has been tested on: | ||
| - macOS 14 (Sonoma) with Apple Silicon | ||
| - macOS 13 (Ventura) with Intel | ||
| - Fresh installations and upgrades | ||
| - Both stable release versions and HEAD (development) versions | ||
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| All tests pass and the installation completes successfully on all tested platforms. | ||
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,90 @@ | ||
| class Mfc < Formula | ||
| desc "Exascale multiphase/multiphysics compressible flow solver" | ||
| homepage "https://mflowcode.github.io/" | ||
| url "https://github.com/MFlowCode/MFC/archive/refs/tags/v5.1.0.tar.gz" | ||
| sha256 "4684bee6a529287f243f8929fb7edb0dfebbb04df7c1806459761c9a6c9261cf" | ||
| license "MIT" | ||
| head "https://github.com/MFlowCode/MFC.git", branch: "master" | ||
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| depends_on "cmake" => :build | ||
| depends_on "gcc" => :build | ||
| depends_on "[email protected]" => :build | ||
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| depends_on "boost" | ||
| depends_on "fftw" | ||
| depends_on "hdf5" | ||
| depends_on "open-mpi" | ||
| depends_on "openblas" | ||
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| def install | ||
| # MFC uses a Python wrapper script for building | ||
| # Homebrew's superenv handles compiler setup via gcc dependency | ||
| system "./mfc.sh", "build", | ||
| "-t", "pre_process", "simulation", "post_process", | ||
| "-j", ENV.make_jobs | ||
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| # Install binaries | ||
| bin.install "build/install/bin/pre_process" | ||
| bin.install "build/install/bin/simulation" | ||
| bin.install "build/install/bin/post_process" | ||
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| # Install mfc.sh script to libexec (for executable scripts) | ||
| libexec.install "mfc.sh" | ||
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| # Install Python toolchain | ||
| prefix.install "toolchain" | ||
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| # Install examples | ||
| pkgshare.install "examples" | ||
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| # Create a wrapper that sets up the environment and calls mfc.sh | ||
| # The wrapper changes to the installation directory because mfc.sh | ||
| # expects to be run from MFC's root (checks for toolchain/util.sh) | ||
| (bin/"mfc").write <<~EOS | ||
| #!/bin/bash | ||
| export BOOST_INCLUDE="#{Formula["boost"].opt_include}" | ||
| cd "#{prefix}" && exec "#{libexec}/mfc.sh" "$@" | ||
| EOS | ||
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| chmod 0755, bin/"mfc" | ||
| end | ||
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| def caveats | ||
| <<~EOS | ||
| MFC has been installed with: | ||
| - pre_process: #{bin}/pre_process | ||
| - simulation: #{bin}/simulation | ||
| - post_process: #{bin}/post_process | ||
| - mfc wrapper: #{bin}/mfc | ||
|
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| Examples are available in: | ||
| #{pkgshare}/examples | ||
|
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| To run an example: | ||
| mfc run #{pkgshare}/examples/1D_sodshocktube/case.py | ||
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| Documentation: https://mflowcode.github.io/ | ||
| EOS | ||
| end | ||
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| test do | ||
| # Test that the binaries exist | ||
| assert_predicate bin/"pre_process", :exist? | ||
| assert_predicate bin/"simulation", :exist? | ||
| assert_predicate bin/"post_process", :exist? | ||
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| # Test mfc wrapper | ||
| system bin/"mfc", "--help" | ||
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| # Test that binaries can execute | ||
| system bin/"pre_process", "-h" | ||
| system bin/"simulation", "-h" | ||
|
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| # Test that mfc.sh is accessible in libexec | ||
| assert_predicate libexec/"mfc.sh", :exist? | ||
| assert_predicate prefix/"toolchain", :exist? | ||
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| # Test running a simple example case to verify full toolchain | ||
| system bin/"mfc", "run", "#{pkgshare}/examples/1D_sodshocktube/case.py" | ||
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| end | ||
| end | ||
|
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