DWI and SC updates: Complex data denoising#165

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PaulBautin wants to merge 3 commits intolamarfrom

Commits on Oct 1, 2025

add flag -dwi_phase
PaulBautin
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Commits on Oct 23, 2025

added designer denoising and exception for when reverse phase encoding image has only one volume
PaulBautin
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Apply transform with mrtrix tools (mrtransform) so bvecs are also transformed, add qc directory for eddy
PaulBautin
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