feat: add avg statistics for first day parameters

mimic-iv/concepts_postgres/firstday/first_day_bg.sql

@@ -1,55 +1,79 @@
 -- THIS SCRIPT IS AUTOMATICALLY GENERATED. DO NOT EDIT IT DIRECTLY.
-DROP TABLE IF EXISTS mimiciv_derived.first_day_bg; CREATE TABLE mimiciv_derived.first_day_bg AS
-/* Highest/lowest blood gas values for all blood specimens, */ /* including venous/arterial/mixed */
+DROP TABLE IF EXISTS mimiciv_derived.first_day_bg;
+CREATE TABLE mimiciv_derived.first_day_bg AS
+/* Highest/lowest blood gas values for all blood specimens, */
+/* including venous/arterial/mixed */
 SELECT
   ie.subject_id,
   ie.stay_id,
   MIN(lactate) AS lactate_min,
+  AVG(lactate) AS lactate_mean,
   MAX(lactate) AS lactate_max,
   MIN(ph) AS ph_min,
+  AVG(ph) AS ph_mean,
   MAX(ph) AS ph_max,
   MIN(so2) AS so2_min,
+  AVG(so2) AS so2_mean,
   MAX(so2) AS so2_max,
   MIN(po2) AS po2_min,
+  AVG(po2) AS po2_mean,
   MAX(po2) AS po2_max,
   MIN(pco2) AS pco2_min,
+  AVG(pco2) AS pco2_mean,
   MAX(pco2) AS pco2_max,
   MIN(aado2) AS aado2_min,
+  AVG(aado2) AS aado2_mean,
   MAX(aado2) AS aado2_max,
   MIN(aado2_calc) AS aado2_calc_min,
+  AVG(aado2_calc) AS aado2_calc_mean,
   MAX(aado2_calc) AS aado2_calc_max,
   MIN(pao2fio2ratio) AS pao2fio2ratio_min,
+  AVG(pao2fio2ratio) AS pao2fio2ratio_mean,
   MAX(pao2fio2ratio) AS pao2fio2ratio_max,
   MIN(baseexcess) AS baseexcess_min,
+  AVG(baseexcess) AS baseexcess_mean,
   MAX(baseexcess) AS baseexcess_max,
   MIN(bicarbonate) AS bicarbonate_min,
+  AVG(bicarbonate) AS bicarbonate_mean,
   MAX(bicarbonate) AS bicarbonate_max,
   MIN(totalco2) AS totalco2_min,
+  AVG(totalco2) AS totalco2_mean,
   MAX(totalco2) AS totalco2_max,
   MIN(hematocrit) AS hematocrit_min,
+  AVG(hematocrit) AS hematocrit_mean,
   MAX(hematocrit) AS hematocrit_max,
   MIN(hemoglobin) AS hemoglobin_min,
+  AVG(hemoglobin) AS hemoglobin_mean,
   MAX(hemoglobin) AS hemoglobin_max,
   MIN(carboxyhemoglobin) AS carboxyhemoglobin_min,
+  AVG(carboxyhemoglobin) AS carboxyhemoglobin_mean,
   MAX(carboxyhemoglobin) AS carboxyhemoglobin_max,
   MIN(methemoglobin) AS methemoglobin_min,
+  AVG(methemoglobin) AS methemoglobin_mean,
   MAX(methemoglobin) AS methemoglobin_max,
   MIN(temperature) AS temperature_min,
+  AVG(temperature) AS temperature_mean,
   MAX(temperature) AS temperature_max,
   MIN(chloride) AS chloride_min,
+  AVG(chloride) AS chloride_mean,
   MAX(chloride) AS chloride_max,
   MIN(calcium) AS calcium_min,
+  AVG(calcium) AS calcium_mean,
   MAX(calcium) AS calcium_max,
   MIN(glucose) AS glucose_min,
+  AVG(glucose) AS glucose_mean,
   MAX(glucose) AS glucose_max,
   MIN(potassium) AS potassium_min,
+  AVG(potassium) AS potassium_mean,
   MAX(potassium) AS potassium_max,
   MIN(sodium) AS sodium_min,
+  AVG(sodium) AS sodium_mean,
   MAX(sodium) AS sodium_max
 FROM mimiciv_icu.icustays AS ie
-LEFT JOIN mimiciv_derived.bg AS bg
+  LEFT JOIN mimiciv_derived.bg AS bg
   ON ie.subject_id = bg.subject_id
-  AND bg.charttime >= ie.intime - INTERVAL '6 HOUR'
+    AND bg.charttime >= ie.intime - INTERVAL
+'6 HOUR'
   AND bg.charttime <= ie.intime + INTERVAL '1 DAY'
 GROUP BY
   ie.subject_id,

mimic-iv/concepts_postgres/firstday/first_day_bg_art.sql

@@ -1,56 +1,79 @@
 -- THIS SCRIPT IS AUTOMATICALLY GENERATED. DO NOT EDIT IT DIRECTLY.
-DROP TABLE IF EXISTS mimiciv_derived.first_day_bg_art; CREATE TABLE mimiciv_derived.first_day_bg_art AS
+DROP TABLE IF EXISTS mimiciv_derived.first_day_bg_art;
+CREATE TABLE mimiciv_derived.first_day_bg_art AS
 /* Highest/lowest blood gas values for arterial blood specimens */
 SELECT
   ie.subject_id,
   ie.stay_id,
   MIN(lactate) AS lactate_min,
+  AVG(lactate) AS lactate_mean,
   MAX(lactate) AS lactate_max,
   MIN(ph) AS ph_min,
+  AVG(ph) AS ph_mean,
   MAX(ph) AS ph_max,
   MIN(so2) AS so2_min,
+  AVG(so2) AS so2_mean,
   MAX(so2) AS so2_max,
   MIN(po2) AS po2_min,
+  AVG(po2) AS po2_mean,
   MAX(po2) AS po2_max,
   MIN(pco2) AS pco2_min,
+  AVG(pco2) AS pco2_mean,
   MAX(pco2) AS pco2_max,
   MIN(aado2) AS aado2_min,
+  AVG(aado2) AS aado2_mean,
   MAX(aado2) AS aado2_max,
   MIN(aado2_calc) AS aado2_calc_min,
+  AVG(aado2_calc) AS aado2_calc_mean,
   MAX(aado2_calc) AS aado2_calc_max,
   MIN(pao2fio2ratio) AS pao2fio2ratio_min,
+  AVG(pao2fio2ratio) AS pao2fio2ratio_mean,
   MAX(pao2fio2ratio) AS pao2fio2ratio_max,
   MIN(baseexcess) AS baseexcess_min,
+  AVG(baseexcess) AS baseexcess_mean,
   MAX(baseexcess) AS baseexcess_max,
   MIN(bicarbonate) AS bicarbonate_min,
+  AVG(bicarbonate) AS bicarbonate_mean,
   MAX(bicarbonate) AS bicarbonate_max,
   MIN(totalco2) AS totalco2_min,
+  AVG(totalco2) AS totalco2_mean,
   MAX(totalco2) AS totalco2_max,
   MIN(hematocrit) AS hematocrit_min,
+  AVG(hematocrit) AS hematocrit_mean,
   MAX(hematocrit) AS hematocrit_max,
   MIN(hemoglobin) AS hemoglobin_min,
+  AVG(hemoglobin) AS hemoglobin_mean,
   MAX(hemoglobin) AS hemoglobin_max,
   MIN(carboxyhemoglobin) AS carboxyhemoglobin_min,
+  AVG(carboxyhemoglobin) AS carboxyhemoglobin_mean,
   MAX(carboxyhemoglobin) AS carboxyhemoglobin_max,
   MIN(methemoglobin) AS methemoglobin_min,
+  AVG(methemoglobin) AS methemoglobin_mean,
   MAX(methemoglobin) AS methemoglobin_max,
   MIN(temperature) AS temperature_min,
+  AVG(temperature) AS temperature_mean,
   MAX(temperature) AS temperature_max,
   MIN(chloride) AS chloride_min,
+  AVG(chloride) AS chloride_mean,
   MAX(chloride) AS chloride_max,
   MIN(calcium) AS calcium_min,
+  AVG(calcium) AS calcium_mean,
   MAX(calcium) AS calcium_max,
   MIN(glucose) AS glucose_min,
+  AVG(glucose) AS glucose_mean,
   MAX(glucose) AS glucose_max,
   MIN(potassium) AS potassium_min,
+  AVG(potassium) AS potassium_mean,
   MAX(potassium) AS potassium_max,
   MIN(sodium) AS sodium_min,
+  AVG(sodium) AS sodium_mean,
   MAX(sodium) AS sodium_max
 FROM mimiciv_icu.icustays AS ie
-LEFT JOIN mimiciv_derived.bg AS bg
+  LEFT JOIN mimiciv_derived.bg AS bg
   ON ie.subject_id = bg.subject_id
-  AND bg.specimen = 'ART.'
-  AND bg.charttime >= ie.intime - INTERVAL '6 HOUR'
+    AND bg.specimen = 'ART.'
+    AND bg.charttime >= ie.intime - INTERVAL
+'6 HOUR'
   AND bg.charttime <= ie.intime + INTERVAL '1 DAY'
 GROUP BY
   ie.subject_id,