v1.5.5

1.5.5 (2026-02-11)

Bug Fixes

• simplify regex (e3498d5)
• update actions workflows (4561ea7)
• update actions workflows (a89b8de)

v1.5.4

1.5.4 (2025-11-14)

Bug Fixes

• another attempt to trigger on release and extract correct tag (534c18d)
• another attempt to trigger on release and extract correct tag (e221191)
• more tag parsing (0a6572d)
• more tag parsing (3b36cdb)
• removed pushing a tagged container, only using latest (0333ebb)
• removed pushing a tagged container, only using latest (e36c6c8)

v1.5.3

1.5.3 (2025-11-13)

Bug Fixes

• workflow trigger on release and tag (09f0432)
• workflow trigger on release and tag (5475f41)

v1.5.2

1.5.2 (2025-11-13)

Bug Fixes

• added apptainer source temporarily, switch to latest tag (3adb000)
• added apptainer source temporarily, switch to latest tag (b2e72a6)
• added missing cores option (65cbe9e)
• added missing cores option (cfe21bd)
• added write package permission to workflow (c58ab98)
• added write package permission to workflow (a147e0b)
• apptainer trigger update (1e24b24)
• apptainer trigger update (541fa62)
• further modifications to workflow (9c4d866)
• lower case repo name (db846c7)
• lower case repo name (cffe59b)
• prevent failing when no NTC guide has any off targets (641a578)
• workflow trigger on release and tag (ff8ef6f)
• workflow trigger on release and tag (4fd3251)

v1.5.1

1.5.1 (2025-11-04)

Bug Fixes

• attempt to trigger apptainer wf (89a8f2a)
• attempt to trigger apptainer wf (fb9dcb1)

v1.5.0

1.5.0 (2025-11-04)

Features

• github actions workflow to automatically deploy apptainer to ghcr (86c5a93)
• minor actions and rules updates (aac8bc1)

Bug Fixes

• cores for report (9ab4cd5)
• enabled pulling of correct container image again (780489b)
• missing input for gh actions test (da5e7e5)
• update github actions (2912669)
• updated rules, replaced 1 with wrapper (ebdb478)

v1.4.0

Features

• added support for fasta export, moved utility function to main scripts for singularity compatibility, closes #42 (a3d448b)

Bug Fixes

• slight changes to report structure (393ce3d)
• update for snakemake 8 commands; removed 1 rule failing with singularity; closes #41 (ed4d4c1)
• update GH actions to latest versions (cdc47ca)
• updated GH actions status badge (b18aea3)

v1.3.0

1.3.0 (2024-09-23)

Features

• changed license to MIT, closes #30 (c1627fb)
• minor updates to README (516a728)

Bug Fixes

• bug when restriction sites is NULL (d26fc02)
• bump container version for next release (d893c6b)
• handling restriction sites, closes #36 (675747d)
• minor issues, closes #34 (8b7b5bb)
• removed conda default channel from envs, closes #38 (0362a0b)

v1.2.0

1.2.0 (2024-02-21)

Features

• added possibility to run with singularity container (9d4598e)
• option to add padding between CDS and intergenic region, closes #25 (de3f8bf)

Bug Fixes

• added .vscode (d4a15e0)
• bug in export of NTC guides when all are filtered out (bf97758)
• overhauled plotting of intergenic regions, closes #28 (da7135c)
• updated container, bumped version (cc9dcf9)

v1.1.0

1.1.0 (2024-01-12)

Features

• added config README and updated workflow catalog options (13649a1)
• added image with pipeline overview (69a816c)
• added option to export guide list as gff file, closes #16 (470025c)
• major and changes to support tiling based guide design (478c68f)
• more flexibility with chromosome names, updated envs, closes #15 (edd1d16)
• parsing of GFF file improved considerably by using bcbio GFF lib, #15 (80c66ff)
• smarter retrieveal of genome name and tax ID; closes #19 (afdc2e3)

Bug Fixes

• added --cores to lint command (c9fd2a5)
• added missing example pics (7a935a8)
• added option to specify GFF sources in config file; closes #21 (b02e869)
• availability of tx_list when target is empty (2e0a248)
• bumped versions and removed unnecessary dependency (2a1975a)
• extended documentation for 'usage' page on sm-workflow-catalog (bd6b4fe)
• removed 1 branch from CI test workflow (f3fe343)
• removed a comment (ac5a6e2)
• removed additional flag fields entirely (53319a0)
• restored original empty fields for flags (01ef026)