MRtrix3 release 3.0.4

Fourth micro (bug fix) update following initial production release.

Please consult the main announcement and summary of changes for details.

What's Changed

• Revert container recipes to pull master by @Lestropie in #2357
• CONTRIBUTING.md: Revise by @Lestropie in #2358
• Eigen 3.4 compatibility by @jdtournier in #2368
• dwicat: Support 3D images by @Lestropie in #2366
• add .nojekyll file to documentation update script by @jdtournier in #2384
• dwifslpreproc: strip DW encoding from padding slice by @jdtournier in #2382
• dwi2response manual: avoid checking and calculating a brain mask by @bjeurissen in #2373
• README.md: Add Twitter reference by @Lestropie in #2395
• Documentation (Fixels and Dixels): double negative typo by @fionaEyoung in #2398
• minimal set of changes to pass pylint 2.11.1 tests by @jdtournier in #2401
• Fix link to advanced debugging help page by @fionaEyoung in #2403
• CONTRIBUTING.md: Revise text RE: target branch for docs changes by @Lestropie in #2402
• Update copyright and docs by @jdtournier in #2425
• tensor2metric: avoid crash when supplying input with wrong size by @bjeurissen in #2423
• Avoid invalid memory access when ROI is malformed in tck header by @jdtournier in #2424
• mrtrix3.run: Fix default MRTRIX_LOGLEVEL by @Lestropie in #2432
• configure: ignore CFLAGS & LDFLAGS from qmake by @jdtournier in #2445
• tcksift2: Fix fixel masking by @Lestropie in #2447
• connectomestats: Fix GLM mode selection by @Lestropie in #2454
• Matlab: multiline key-value metadata #2386 by @fionaEyoung in #2455
• connectomestats: Fix output paths for some files by @Lestropie in #2453
• Various DICOM updates - take 2 with updated test data by @jdtournier in #2450
• mrtrix3.utils.RunList: Pass kwargs to run.command() by @Lestropie in #2209
• Dicom fix XA10A parsing by @jdtournier in #2462
• Container: Additional fixes by @Lestropie in #2461
• Dicom fix missing import siemens enhanced by @jdtournier in #2466
• Fixes incorrect face orientation in PLY output format by @blezek in #2490
• mrview connectome tool: fix display of nodes when a node is empty by @jdtournier in #2497
• Correctly transform mask instead of last contrast by @bjeurissen in #2503
• mrtransform: DWI grad export on linear by @Lestropie in #2508
• Write separate std_dev for each variance group by @bjeurissen in #2507
• mrview: Permit SH lmax=0 by @bjeurissen in #2511
• Fix build progress by @jdtournier in #2494
• Tckconvert write binary vtk by @jdtournier in #2489
• Python: don't cleanup on SIGINT if -nocleanup option has been provided by @jdtournier in #2484
• update mime & icon handling on linux by @jdtournier in #2478
• matlab: Fix erroneous reference to non-existent "tracks" identifier by @fionaEyoung in #2522
• dwifslpreproc: Refine slspec modification by @Lestropie in #2505
• Container recipe updates following 3.0.3 release by @Lestropie in #2370
• mrview: improved error reporting in fixel plot tool by @tbschuster in #2367
• GitHub Actions: fix dependencies on Ubuntu 22.04 by @jdtournier in #2532
• DICOM: fix parsing of DateTime entry by @jdtournier in #2531
• PNG export: Exception on too few axes by @Lestropie in #2535
• mrview fix tractography.tsf_colourmap by @maxpietsch in #2452
• DICOM: fix import of gradient table by @jdtournier in #2523
• Final checks before 3.0.4 release by @jdtournier in #2543

Full Changelog: 3.0.3...3.0.4