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  1. ncmw ncmw Public

    A metabolic modeling workflow for communities of organisms in an nasal medium.

    Jupyter Notebook 7 2

  2. BOFdat BOFdat Public

    Forked from jclachance/BOFdat

    Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data

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  3. refinegems refinegems Public

    Forked from draeger-lab/refinegems

    refineGEMs is a python package inteded to help with the curation of genome-scale metabolic models (GEMS).

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  4. SPECIMEN SPECIMEN Public

    Forked from draeger-lab/SPECIMEN

    Automated pipeline for strain-specific metabolic modeling based on a high-quality template model.

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  5. MassChargeCuration MassChargeCuration Public

    Forked from draeger-lab/MassChargeCuration

    Python module to automatically curate the mass and charge assignments for metabolites in a metabolic model.

    Jupyter Notebook

  6. pymCADRE pymCADRE Public

    Forked from draeger-lab/pymCADRE

    pymCADRE enables the reconstruction of tissue-specific metabolic models in Python using transcriptomic data and information of the network topology.

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