v1.4.2

What's Changed

Bugfixes

• fix docstring for peptide modification site parameter by @mschwoer in #266
• Fix multiple ms files by @mschwoer in #265
• Fix issue 267 by @mschwoer in #270
• pin pandas version by @mschwoer in #271

Full Changelog: v1.4.1...v1.4.2

v1.4.1

What's Changed

• Provide charge model by @mo-sameh in #245

Other Changes / unlabeled

• auto-select port by @mschwoer in #257
• Beautify readme by @mschwoer in #258
• add Dockerfile, workflow, and Readme by @mschwoer in #260

Full Changelog: v1.4.0...v1.4.1

v1.4.0

What's Changed

Now requires alphabase>=1.5.0

New Features

• Adding Charged Fragment Types to MS2 Model Weights by @mo-sameh in #228
• update default pretrained weights source by @mo-sameh in #236
• Update adaptive frag types interfaces by @mo-sameh in #237
• Lazy load pretrained models by @mschwoer in #229

Other Changes / unlabeled

• Adapt to new alphabase by @mschwoer in #216
• upgrade release workflow by @mschwoer in #223
• Adapt to latest standards by @mschwoer in #227
• Development by @mschwoer in #233
• Clean reqs by @mschwoer in #231
• small_adaptions by @mschwoer in #243
• remove pyrawfilereader.py by @mschwoer in #230

Full Changelog: v1.3.1...v1.4.0

v1.3.2

What's Changed

No new functionality, just changes under the hood.

Other Changes / unlabeled

• Development by @mschwoer in #222
• upgrade release workflow by @mschwoer in #223
• Adapt to new alphabase by @mschwoer in #216
• Adapt to latest standards by @mschwoer in #227
• Development by @mschwoer in #233

Full Changelog: v1.3.1...v1.3.2

v1.3.1

What's Changed

Bug fixes

• Fix installers: Install using pyproject toml by @mschwoer in #220

Other Changes / unlabeled

• remove old release workflow by @mschwoer in #213

Full Changelog: v1.3.0...v1.3.1

v1.3.0

What's Changed

Other Changes / unlabeled

• Apply ruff formatting by @mschwoer in #182
• #179 ADD HLA module by @jalew188 in #181
• 183 tutorial immunopeptidomics by @jalew188 in #188
• Try macos-latest for arm64 in github actions by @jalew188 in #192
• remove macos from github CI due to diff errors by @jalew188 in #193
• #185 transfer GUI only supports best supported psm_readers by @jalew188 in #186
• replace space with _ in NC-term PTMs by @jalew188 in #180
• add new release workflow action by @mschwoer in #202
• fix return type in docstring by @mo-sameh in #197
• 187 tutorial speclib by @jalew188 in #196
• Prepare for new release workflow by @mschwoer in #206
• Development by @jalew188 in #208

New Contributors

• @mschwoer made their first contribution in #182

Full Changelog: 1.2.1...v1.3.0

Release version 1.2.1

What's Changed

• FIX use Lumos model for Astral by @GeorgWa in #174
• FIX use lumos model for Astral by @jalew188 in #175

Full Changelog: 1.2.0...1.2.1

Release version 1.2.0

What's Changed

• FIX github action failed with setup-miniconda@v2 to setup-miniconda@v3 by @jalew188 in #159
• CHORE comment on why using macos-13 instead of macos-latest and macos-xlarge by @jalew188 in #160
• save charge model when it exists by @mo-sameh in #156
• Update interface to allow different learning rate schedulers by @mo-sameh in #155
• FEAT use inference_mode instead of no_grad by @jalew188 in #161
• Feat: Add train callbacks by @mo-sameh in #162
• Allow change of device for charge models through initialization by @mo-sameh in #165
• Remove nbdev from peptdeep by @jalew188 in #167
• Pre commit hooks by @jalew188 in #171
• Development by @jalew188 in #173

New Contributors

• @mo-sameh made their first contribution in #156

Full Changelog: 1.1.9...1.2.0

Release version 1.1.9

Merge pull request #152 from MannLabs/development

Bump version: 1.1.8 → 1.1.9

Release version 1.1.8

Merge pull request #151 from MannLabs/development

Development