Protein Group Reader

[lucas-diedrich]

Protein group reader functionality, based on alphabase.pg_reader module

• Adds wrapper function for protein group tables
• Deprecates dvpio.read.omics.parse_df function
• Adds deprecation logic.

[lucas-diedrich]

Tests will fail until alphabase v.1.63 is released on pypy

[codecov-commenter]

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Codecov Report

❌ Patch coverage is 92.85714% with 3 lines in your changes missing coverage. Please review.
✅ Project coverage is 94.49%. Comparing base (872bd19) to head (140b0a8).
⚠️ Report is 5 commits behind head on main.

Files with missing lines	Patch %	Lines
src/dvpio/read/omics/report_reader.py	86.36%	3 Missing ⚠️
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Additional details and impacted files

@@            Coverage Diff             @@
##             main     #123      +/-   ##
==========================================
+ Coverage   93.22%   94.49%   +1.26%     
==========================================
  Files          16       16              
  Lines         443      472      +29     
==========================================
+ Hits          413      446      +33     
+ Misses         30       26       -4     

Files with missing lines	Coverage Δ
src/dvpio/_utils.py	100.00% <100.00%> (ø)
src/dvpio/read/omics/__init__.py	100.00% <100.00%> (ø)
src/dvpio/read/omics/report_reader.py	92.00% <86.36%> (-4.88%)	⬇️

... and 2 files with indirect coverage changes

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