MannLabs · sophiamaedler · Jan 27, 2025 · Dec 21, 2024 · Jan 23, 2025 · Jan 23, 2025
diff --git a/.gitmodules b/.gitmodules
@@ -0,0 +1,3 @@
+[submodule "examples/notebooks"]
+	path = examples/notebooks
+	url = https://github.com/MannLabs/scPortrait-notebooks
diff --git a/development/processing_notebook.ipynb b/development/processing_notebook.ipynb
diff --git a/example_data/example_1/config_example1.yml b/example_data/example_1/config_example1.yml
diff --git a/example_data/example_1/input_images/Ch1.tif b/example_data/example_1/input_images/Ch1.tif
diff --git a/example_data/example_1/input_images/Ch2.tif b/example_data/example_1/input_images/Ch2.tif
diff --git a/example_data/example_1/input_images/Ch3.tif b/example_data/example_1/input_images/Ch3.tif
diff --git a/example_data/example_2/config_example2.yml b/example_data/example_2/config_example2.yml
diff --git a/example_data/example_2/input_images/ch1.tif b/example_data/example_2/input_images/ch1.tif
diff --git a/example_data/example_2/input_images/ch2.tif b/example_data/example_2/input_images/ch2.tif
diff --git a/example_data/example_2/input_images/ch3.tif b/example_data/example_2/input_images/ch3.tif
diff --git a/example_data/example_2/processing_notebook.ipynb b/example_data/example_2/processing_notebook.ipynb
diff --git a/example_data/example_3/config_example3.yml b/example_data/example_3/config_example3.yml
diff --git a/example_data/example_3/input_images/Ch1.tif b/example_data/example_3/input_images/Ch1.tif
diff --git a/example_data/example_3/input_images/Ch2.tif b/example_data/example_3/input_images/Ch2.tif
diff --git a/example_data/example_3/input_images/Ch3.tif b/example_data/example_3/input_images/Ch3.tif
diff --git a/example_data/example_4/config_example4.yml b/example_data/example_4/config_example4.yml
diff --git a/example_data/example_4/input_images/ch1.tif b/example_data/example_4/input_images/ch1.tif
diff --git a/example_data/example_4/input_images/ch2.tif b/example_data/example_4/input_images/ch2.tif
diff --git a/example_data/example_4/input_images/ch3.tif b/example_data/example_4/input_images/ch3.tif