improve spatialdata file handling#171
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sophiamaedler merged 14 commits intomainfrom Feb 11, 2025
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…om spatialdata object
…ialdata object it should be possible to turn of rechunking when reading from an existing spatialdata object under the asumption that the chunksize was set logically. This prevents having to recalculate already existing chunks which has a lot of overhead during writing.
…an have its own centers file
when the segmentation mask is written to the spatialdata object the centers file for that mask is also generated. This not only tracks unique cell_ids but also their location for easier visualization see #42
…atial data object addresses #170
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- make rechunking optional
- automatically calculate centers for all added segmentation masks