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Bug CLI tool continue_input with special character#123

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galjos merged 1 commit intodevfrom
galjos/issue122
May 5, 2025
Merged

Bug CLI tool continue_input with special character#123
galjos merged 1 commit intodevfrom
galjos/issue122

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@galjos
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@galjos galjos commented Apr 4, 2025

Fixes #122
URL was not defined in the lark files.

@galjos galjos requested review from 97gamjak and Lucky-Armin April 4, 2025 14:23
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github-actions bot commented Apr 4, 2025

PYLINT REPORT

Your code has been rated at 9.79/10 (previous run: 9.79/10, +0.00)

Full report

Raw metrics

type number % previous difference
code 8039 40.11 8039 =
docstring 8770 43.76 8770 =
comment 268 1.34 268 =
empty 2963 14.79 2963 =

Duplication

now previous difference
nb duplicated lines 0 0 0
percent duplicated lines 0.000 0.000 =

Messages by category

type number previous difference
convention 2 2 2
refactor 71 71 71
warning 12 12 12
error 3 3 3

% errors / warnings by module

module error warning refactor convention
PQAnalysis.type_checking 66.67 0.00 0.00 0.00
PQAnalysis 33.33 0.00 0.00 0.00
PQAnalysis.atomic_system.atomic_system 0.00 16.67 12.68 0.00
PQAnalysis.topology.init 0.00 16.67 0.00 0.00
PQAnalysis.tools.traj_to_com_traj 0.00 16.67 0.00 0.00
PQAnalysis.io.moldescriptor_reader 0.00 16.67 0.00 0.00
PQAnalysis.tools.add_molecule 0.00 8.33 8.45 0.00
PQAnalysis.io.conversion_api 0.00 8.33 2.82 0.00
PQAnalysis.utils.custom_logging 0.00 8.33 0.00 0.00
PQAnalysis.io.write_api 0.00 8.33 0.00 0.00
PQAnalysis.io.nep.nep_writer 0.00 0.00 15.49 50.00
PQAnalysis.io.traj_file.trajectory_reader 0.00 0.00 8.45 0.00
PQAnalysis.analysis.rdf.rdf 0.00 0.00 7.04 0.00
PQAnalysis.traj.init 0.00 0.00 4.23 0.00
PQAnalysis.topology.topology 0.00 0.00 4.23 0.00
PQAnalysis.topology.bonded_topology.dihedral 0.00 0.00 4.23 0.00
PQAnalysis.core.residue 0.00 0.00 4.23 0.00
PQAnalysis.topology.bonded_topology.bonded_topology 0.00 0.00 2.82 0.00
PQAnalysis.topology.bonded_topology.bond 0.00 0.00 2.82 0.00
PQAnalysis.topology.bonded_topology.angle 0.00 0.00 2.82 0.00
PQAnalysis.io.traj_file.frame_reader 0.00 0.00 2.82 0.00
PQAnalysis.core.cell.cell 0.00 0.00 2.82 0.00
PQAnalysis.atomic_system._standard_properties 0.00 0.00 2.82 0.00
PQAnalysis.traj.formats 0.00 0.00 1.41 0.00
PQAnalysis.topology.selection 0.00 0.00 1.41 0.00
PQAnalysis.io.restart_file.restart_reader 0.00 0.00 1.41 0.00
PQAnalysis.io.input_file_reader.pq_analysis._parse 0.00 0.00 1.41 0.00
PQAnalysis.io.input_file_reader.pq.pq_input_file_reader 0.00 0.00 1.41 0.00
PQAnalysis.io.input_file_reader.input_file_parser 0.00 0.00 1.41 0.00
PQAnalysis.io.info_file_reader 0.00 0.00 1.41 0.00
PQAnalysis.io.formats 0.00 0.00 1.41 0.00
PQAnalysis.analysis.rdf.rdf_input_file_reader 0.00 0.00 0.00 50.00

Messages

message id occurrences
too-many-positional-arguments 19
too-many-arguments 19
too-many-instance-attributes 10
inconsistent-return-statements 9
fixme 9
too-many-locals 3
too-complex 3
duplicate-code 3
too-many-branches 2
missing-kwoa 2
unused-import 1
too-many-statements 1
too-many-return-statements 1
too-many-public-methods 1
too-many-lines 1
possibly-used-before-assignment 1
missing-param-doc 1
invalid-name 1
arguments-differ 1

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codecov bot commented Apr 4, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 85.62%. Comparing base (e7ee687) to head (e33870f).
Report is 4 commits behind head on dev.

Additional details and impacted files
@@           Coverage Diff           @@
##              dev     #123   +/-   ##
=======================================
  Coverage   85.62%   85.62%           
=======================================
  Files         126      126           
  Lines        5092     5092           
=======================================
  Hits         4360     4360           
  Misses        732      732           
Flag Coverage Δ
unittests 85.62% <ø> (+0.01%) ⬆️
🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@galjos galjos merged commit 5bab156 into dev May 5, 2025
5 checks passed
@galjos galjos deleted the galjos/issue122 branch May 5, 2025 09:34
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2 participants