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Deprecation updates#330

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gdevenyi wants to merge 5 commits intoMouse-Imaging-Centre:developfrom
gdevenyi:deprecation-updates
Open

Deprecation updates#330
gdevenyi wants to merge 5 commits intoMouse-Imaging-Centre:developfrom
gdevenyi:deprecation-updates

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@jasonlerch @vfonov @yohanyee

Fixing test failures in R/4.5.0

So far fixed #322

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Fixed #331

@Mouse-Imaging-Centre Mouse-Imaging-Centre locked and limited conversation to collaborators Sep 24, 2025
@Mouse-Imaging-Centre Mouse-Imaging-Centre unlocked this conversation Sep 24, 2025
@gdevenyi gdevenyi requested a review from Copilot February 20, 2026 14:58
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Pull request overview

This PR addresses test failures in R/4.5.0 by updating code formatting to comply with new R style requirements. The changes primarily involve reformatting function calls, conditional statements, and code blocks to use proper spacing and line breaks according to updated R style guidelines.

Changes:

  • Fixed deprecated syntax for if-statements and function calls across test files
  • Reformatted multi-line function calls and arguments for better readability
  • Updated code formatting in R source files and configuration files

Reviewed changes

Copilot reviewed 61 out of 61 changed files in this pull request and generated no comments.

Show a summary per file
File Description
tests/testthat/test_*.R Reformatted if-statements and function calls to comply with R/4.5.0 requirements
inst/shinyRMINC/*.R Reformatted UI and server code with proper spacing and line breaks
inst/parallel/*.R Reformatted parallel configuration files
R/*.R Reformatted source files with proper function call formatting
etc/*.R Reformatted example and test scripts
.git-blame-ignore-revs Added commit hash to ignore formatting changes in git blame

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2 participants