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refactor: update plugin to follow Python best practices #30

refactor: update plugin to follow Python best practices

refactor: update plugin to follow Python best practices #30

Workflow file for this run

name: "Build - Linux"
on:
push:
branches: [main, master]
pull_request:
jobs:
test:
name: Linux - Python ${{ matrix.python-version }}
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.9", "3.10", "3.11", "3.12"]
timeout-minutes: 10
steps:
- name: Checkout code
uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install --upgrade pip setuptools wheel
pip install beautifulsoup4 multiqc
- name: Install MultiQC_SAV
run: pip install .
- name: Test MiSeq
run: multiqc -m SAV test_data/MiSeq
- name: Test HiSeq
run: multiqc -m SAV test_data/HiSeq
- name: Test NextSeq500
run: multiqc -m SAV test_data/NextSeq500
- name: Test NextSeq2000
run: multiqc -m SAV test_data/NextSeq2000
- name: Test NovaSeq
run: multiqc -m SAV test_data/NovaSeq