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enryHenryH
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🎨 toogle streamlit app running in tutorial (especially for colab)
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-36
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2 files changed

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-36
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‎docs/vuegen_basic_case_study.ipynb‎

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@@ -73,7 +73,7 @@
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"execution_count": 1,
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"metadata": {},
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"outputs": [],
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"source": [
@@ -117,9 +117,21 @@
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"execution_count": 2,
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"metadata": {},
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"outputs": [],
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"outputs": [
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{
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"ename": "ModuleNotFoundError",
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"evalue": "No module named 'vuegen'",
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"output_type": "error",
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"traceback": [
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"\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
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"\u001b[0;31mModuleNotFoundError\u001b[0m Traceback (most recent call last)",
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"Cell \u001b[0;32mIn[2], line 4\u001b[0m\n\u001b[1;32m 2\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01mos\u001b[39;00m\n\u001b[1;32m 3\u001b[0m \u001b[38;5;28;01mimport\u001b[39;00m \u001b[38;5;21;01myaml\u001b[39;00m\n\u001b[0;32m----> 4\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mvuegen\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m report_generator\n\u001b[1;32m 5\u001b[0m \u001b[38;5;28;01mfrom\u001b[39;00m \u001b[38;5;21;01mvuegen\u001b[39;00m\u001b[38;5;21;01m.\u001b[39;00m\u001b[38;5;21;01mutils\u001b[39;00m \u001b[38;5;28;01mimport\u001b[39;00m get_logger, load_yaml_config\n\u001b[1;32m 7\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m IN_COLAB:\n",
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"\u001b[0;31mModuleNotFoundError\u001b[0m: No module named 'vuegen'"
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]
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}
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],
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"source": [
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"# Imports\n",
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"import os\n",
@@ -169,15 +181,28 @@
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"Streamlit report not executed, set run_streamlit to True to run the report\n"
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]
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}
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],
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"source": [
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"# # Launch the Streamlit report depneding on the platform\n",
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"# if not IN_COLAB:\n",
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"# !streamlit run streamlit_report/sections/report_manager.py\n",
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"# else: # https://discuss.streamlit.io/t/how-to-launch-streamlit-app-from-google-colab-notebook/42399\n",
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"# print(\"Password/Enpoint IP for localtunnel is:\",urllib.request.urlopen('https://ipv4.icanhazip.com').read().decode('utf8').strip(\"\\n\"))\n",
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"# !streamlit run streamlit_report/sections/report_manager.py --server.address=localhost &>/content/logs.txt &\n",
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"# !npx localtunnel --port 8501"
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"run_streamlit = False\n",
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"# run_streamlit = True # uncomment line to run the streamlit report\n",
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"# Launch the Streamlit report depneding on the platform\n",
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"if not IN_COLAB and run_streamlit:\n",
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" !streamlit run streamlit_report/sections/report_manager.py\n",
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"elif run_streamlit:\n",
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" # see: https://discuss.streamlit.io/t/how-to-launch-streamlit-app-from-google-colab-notebook/42399\n",
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" print(\"Password/Enpoint IP for localtunnel is:\",urllib.request.urlopen('https://ipv4.icanhazip.com').read().decode('utf8').strip(\"\\n\"))\n",
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" !streamlit run streamlit_report/sections/report_manager.py --server.address=localhost &>/content/logs.txt &\n",
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" !npx localtunnel --port 8501 --subdomain vuegen-demo\n",
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"else:\n",
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" print(\"Streamlit report not executed, set run_streamlit to True to run the report\")"
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]
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},
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{
@@ -314,13 +339,18 @@
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"metadata": {},
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"outputs": [],
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"source": [
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"# # Launch the Streamlit report depneding on the platform\n",
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"# if not IN_COLAB:\n",
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"# !streamlit run streamlit_report/sections/report_manager.py\n",
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"# else: # https://discuss.streamlit.io/t/how-to-launch-streamlit-app-from-google-colab-notebook/42399\n",
321-
"# print(\"Password/Enpoint IP for localtunnel is:\",urllib.request.urlopen('https://ipv4.icanhazip.com').read().decode('utf8').strip(\"\\n\"))\n",
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"# !streamlit run streamlit_report/sections/report_manager.py --server.address=localhost &>/content/logs.txt &\n",
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"# !npx localtunnel --port 8501"
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"run_streamlit = False\n",
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"# run_streamlit = True # uncomment line to run the streamlit report\n",
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"# Launch the Streamlit report depneding on the platform\n",
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"if not IN_COLAB and run_streamlit:\n",
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" !streamlit run streamlit_report/sections/report_manager.py\n",
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"elif run_streamlit:\n",
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" # see: https://discuss.streamlit.io/t/how-to-launch-streamlit-app-from-google-colab-notebook/42399\n",
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" print(\"Password/Enpoint IP for localtunnel is:\",urllib.request.urlopen('https://ipv4.icanhazip.com').read().decode('utf8').strip(\"\\n\"))\n",
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" !streamlit run streamlit_report/sections/report_manager.py --server.address=localhost &>/content/logs.txt &\n",
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" !npx localtunnel --port 8501 --subdomain vuegen-demo\n",
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"else:\n",
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" print(\"Streamlit report not executed, set run_streamlit to True to run the report\")"
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]
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},
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{
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],
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"metadata": {
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"kernelspec": {
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"display_name": "vuegen-IFxaxej_-py3.12",
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"display_name": "vuegen",
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"language": "python",
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"name": "python3"
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},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.12.6"
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"version": "3.9.21"
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}
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},
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"nbformat": 4,

‎docs/vuegen_case_study_earth_microbiome.ipynb‎

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Original file line numberDiff line numberDiff line change
@@ -1389,13 +1389,18 @@
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"metadata": {},
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"outputs": [],
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"source": [
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"# # Launch the Streamlit report depneding on the platform\n",
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"# if not IN_COLAB:\n",
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"# !streamlit run streamlit_report/sections/report_manager.py\n",
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"# else: # https://discuss.streamlit.io/t/how-to-launch-streamlit-app-from-google-colab-notebook/42399\n",
1396-
"# print(\"Password/Enpoint IP for localtunnel is:\",urllib.request.urlopen('https://ipv4.icanhazip.com').read().decode('utf8').strip(\"\\n\"))\n",
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"# !streamlit run streamlit_report/sections/report_manager.py --server.address=localhost &>/content/logs.txt &\n",
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"# !npx localtunnel --port 8501"
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"run_streamlit = False\n",
1393+
"# run_streamlit = True # uncomment line to run the streamlit report\n",
1394+
"# Launch the Streamlit report depneding on the platform\n",
1395+
"if not IN_COLAB and run_streamlit:\n",
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" !streamlit run streamlit_report/sections/report_manager.py\n",
1397+
"elif run_streamlit:\n",
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" # see: https://discuss.streamlit.io/t/how-to-launch-streamlit-app-from-google-colab-notebook/42399\n",
1399+
" print(\"Password/Enpoint IP for localtunnel is:\",urllib.request.urlopen('https://ipv4.icanhazip.com').read().decode('utf8').strip(\"\\n\"))\n",
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" !streamlit run streamlit_report/sections/report_manager.py --server.address=localhost &>/content/logs.txt &\n",
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" !npx localtunnel --port 8501 --subdomain vuegen-demo\n",
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"else:\n",
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" print(\"Streamlit report not executed, set run_streamlit to True to run the report\")"
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]
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},
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{
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"metadata": {},
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"outputs": [],
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"source": [
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"# # Launch the Streamlit report depneding on the platform\n",
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"# if not IN_COLAB:\n",
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"# !streamlit run streamlit_report/sections/report_manager.py\n",
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"# else: # https://discuss.streamlit.io/t/how-to-launch-streamlit-app-from-google-colab-notebook/42399\n",
1575-
"# print(\"Password/Enpoint IP for localtunnel is:\",urllib.request.urlopen('https://ipv4.icanhazip.com').read().decode('utf8').strip(\"\\n\"))\n",
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"# !streamlit run streamlit_report/sections/report_manager.py --server.address=localhost &>/content/logs.txt &\n",
1577-
"# !npx localtunnel --port 8501"
1576+
"run_streamlit = False\n",
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"# run_streamlit = True # uncomment line to run the streamlit report\n",
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"# Launch the Streamlit report depneding on the platform\n",
1579+
"if not IN_COLAB and run_streamlit:\n",
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" !streamlit run streamlit_report/sections/report_manager.py\n",
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"elif run_streamlit:\n",
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" # see: https://discuss.streamlit.io/t/how-to-launch-streamlit-app-from-google-colab-notebook/42399\n",
1583+
" print(\"Password/Enpoint IP for localtunnel is:\",urllib.request.urlopen('https://ipv4.icanhazip.com').read().decode('utf8').strip(\"\\n\"))\n",
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" !streamlit run streamlit_report/sections/report_manager.py --server.address=localhost &>/content/logs.txt &\n",
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" !npx localtunnel --port 8501 --subdomain vuegen-demo\n",
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"else:\n",
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" print(\"Streamlit report not executed, set run_streamlit to True to run the report\")"
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]
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},
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{
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],
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"metadata": {
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"kernelspec": {
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"display_name": "vuegen-IFxaxej_-py3.12",
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"display_name": "vuegen",
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"language": "python",
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"name": "python3"
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},
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.12.6"
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"version": "3.9.21"
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}
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},
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"nbformat": 4,

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