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@NCI-GDC

Genomic Data Commons

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  1. gdc-workflow-overview gdc-workflow-overview Public

    Overview of GDC Harmonization Workflows

    36 10

  2. gdc-client gdc-client Public

    GDC Data Transfer Tool

    Python 155 43

  3. gdcdatamodel gdcdatamodel Public archive

    Translation layer between the GDC Data Dictionary and psqlgraph

    Python 28 3

  4. gdcdictionary gdcdictionary Public

    Data dictionary for the GDC

    Python 55 37

  5. psqlgraph psqlgraph Public

    Library for graph-like storage in postgresql using sqlalchemy

    Python 24 6

Repositories

Showing 10 of 84 repositories
  • gdc-frontend-framework Public
    NCI-GDC/gdc-frontend-framework’s past year of commit activity
    TypeScript 13 Apache-2.0 0 0 9 Updated Feb 11, 2026
  • gdc-dnaseq-cwl Public

    CWL for GDC DNASeq workflows

    NCI-GDC/gdc-dnaseq-cwl’s past year of commit activity
    Common Workflow Language 23 Apache-2.0 14 0 3 Updated Feb 6, 2026
  • gdc-sanger-somatic-tool Public

    Support scripts for the sanger somatic workflows

    NCI-GDC/gdc-sanger-somatic-tool’s past year of commit activity
    Python 0 Apache-2.0 1 0 19 Updated Feb 5, 2026
  • gdc-docs Public Forked from NCIP/gdc-docs

    Official repository for GDC User Guides in Markdown format

    NCI-GDC/gdc-docs’s past year of commit activity
    JavaScript 62 Apache-2.0 44 0 20 Updated Feb 4, 2026
  • vep-cwl Public

    GDC VEP Variant Annotation Workflow

    NCI-GDC/vep-cwl’s past year of commit activity
    Common Workflow Language 0 Apache-2.0 3 0 3 Updated Jan 30, 2026
  • picard_metrics_sqlite Public
    NCI-GDC/picard_metrics_sqlite’s past year of commit activity
    Python 0 Apache-2.0 1 0 4 Updated Jan 26, 2026
  • fastqc_to_json Public
    NCI-GDC/fastqc_to_json’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Jan 26, 2026
  • fastqc_db Public
    NCI-GDC/fastqc_db’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Jan 26, 2026
  • merge-sqlite Public
    NCI-GDC/merge-sqlite’s past year of commit activity
    Python 0 Apache-2.0 1 0 4 Updated Jan 16, 2026
  • variant-filtration-cwl Public

    Workflows for filtering GDC VCFs

    NCI-GDC/variant-filtration-cwl’s past year of commit activity
    Common Workflow Language 1 Apache-2.0 2 0 0 Updated Jan 15, 2026
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