pyproject.toml

[build-system]
requires = ["setuptools>=66", "wheel", "setuptools_scm[toml]>=8.0.4", "versionista>=1.1.0"]
build-backend = "setuptools.build_meta"

[project]
name = "gdc-plaster"
description = "GDC data model generator."
readme = "README.md"
requires-python = ">=3.10"
license = {text = "Apache Software License 2.0"}
authors = [{name = "GDC Feature Team", email = "gdc_dev_questions-aaaaae2lhsbell56tlvh3upgoq@cdis.slack.com"}]
maintainers = [{name = "GDC Feature Team", email = "gdc_dev_questions-aaaaae2lhsbell56tlvh3upgoq@cdis.slack.com"}]
keywords = ["GDC Data Commons", "Data Model", "gdcdictionary", "plaster"]
classifiers = [
  "Intended Audience :: Developers",
  "Programming Language :: Python",
  "Programming Language :: Python :: 3",
  "Programming Language :: Python :: 3.10",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "Programming Language :: Python :: 3.13",
  "Programming Language :: Python :: 3.14",
  "Development Status :: 5 - Production/Stable",
  "License :: OSI Approved :: Apache Software License"
]
dependencies = [
  "click~=8.0",
  "dulwich",
  "Jinja2~=3.0",
  "jsonschema",
  "pyyaml>=6.0.1",
  "toml~=0.10",
  "psqlgml>=0.2.4",
  "psqlgraph>=3",
  "setuptools<82"
]
dynamic = ["version"]

[project.optional-dependencies]
dev = [
  "coverage[toml]",
  "deepdiff>=5.8.1",
  "pyhamcrest",
  "pytest>=6.2",
  "pytest-cov",
  "tox"
]
docs = [
  "sphinx",
  "sphinx_rtd_theme",
  "sphinxcontrib-httpdomain"
]
examples = [
  "pytest>=6.2",
  "pytest-psqlgraph>=0.1.1"
]

[project.scripts]
plaster = "plaster.cli:app"

[project.urls]
Homepage = "https://github.com/NCI-GDC/plaster"

[tool.coverage.html]
title = "plaster coverage report"
directory = "docs/htmlcov"
show_contexts = true

[tool.coverage.run]
branch = true
context = "unit tests"
source = ["plaster"]

[tool.mypy]
pretty = true
ignore_missing_imports = true
disallow_untyped_defs = true
disallow_incomplete_defs = true
warn_redundant_casts = true
strict_optional = true
no_implicit_optional = true
check_untyped_defs = true

[tool.mypy-dulwich]
ignore_missing_imports = true

[tool.mypy-jsonschema]
ignore_missing_imports = true

[tool.pytest.ini_options]
minversion = 6.2
python_files = "test_*.py"
python_functions = "test_*"
junit_family = "xunit2"
junit_logging = "system-out"
console_output_style = "classic"
log_cli_level = "INFO"
log_cli = "true"
filterwarnings = ["ignore::DeprecationWarning"]
addopts = "-rfE --color=yes --cov=plaster --cov-report term"
norecursedirs = [
  ".git",
  ".tox",
  "dist",
  "build"
]
testpaths = [
  "tests/unit",
  "tests/integration"
]

[tool.ruff]
line-length = 95
src = ["src", "tests"]
target-version = "py310"

[tool.ruff.format]
docstring-code-format = true

[tool.ruff.lint]
# see https://docs.astral.sh/ruff/rules/
select = [
  "E", # pydocstyle errors
  "F", # pyflakes
  "I", # isort
  "N", # pep8 naming
  "RUF", # ruff specific rules
  "UP", # pyupgrade
  "W" # pydocstyle warnings
]

[tool.setuptools]
zip-safe = true
package-dir = {"" = "src"}
include-package-data = true

[tool.setuptools.packages.find]
where = ["src"]
namespaces = false

[tool.setuptools_scm]
local_scheme = "versionista-local-format"
version_scheme = "versionista-format"

[tool.tox]
minversion = "4.5.0"
env_list = ["py310", "py311", "py312", "py313", "py314"]
skip_missing_interpreters = true
isolated_build = "true"

[tool.tox.env.docs]
commands = [
  ["sphinx-build", "docs/source", "docs/build", "-b", "html"]
]

[tool.tox.env.pre-commit]
skip_install = true
deps = [
  "mypy",
  "pre-commit"
]
allowlist_externals = ["bash"]
commands = [
  ["pre-commit", "run", "--all-files", "--show-diff-on-failure", "{postargs:}"],
  ["bash", "mypy"]
]

[tool.tox.env.publish]
pass_env = [
  "TWINE_*",
  "CI_COMMIT_*"
]
skip_install = true
deps = [
  "setuptools_scm",
  "setuptools_git_versioning",
  "build",
  "twine"
]
install_command = "python -m pip install {opts} {packages}"
commands = [
  ["python", "-m", "setuptools_git_versioning"],
  ["python", "-m", "build"],
  ["python", "-m", "twine", "check", "dist/*"],
  ["python", "-m", "twine", "upload", "dist/*"]
]

[tool.tox.env_run_base]
pass_env = [
  "PG_*",
  "PIP_*"
]
set_env = {NO_PROXY = "localhost,postgres", no_proxy = "localhost,postgres", PIP_INDEX_URL = "https://nexus.osdc.io/repository/pypi-all/simple"}
deps = [".[dev]"]
commands = [
  ["python", "-m", "pytest", "--junitxml=report.xml", "--cov-report", "html", "--cov-report", "xml:coverage.xml", "{posargs}"]
]