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75d229a
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includes filtered transcript outputs (BAM,SAM,FASTQ) size of output dir reduced by tagging temps
e4a2abc
additional updates after training
8920e38
includes new config file, user provides parameters includes scripts for masking references
e4540a1
options for reference masking, clean-up of transcripts, DEG analysis
3f59c16
Beta testing of pipeline - used for demo purposes