Code cleanup#22

Merged

NErler merged 40 commits intomasterfrom

Dec 14, 2025

Commits on Nov 17, 2025

Commits on Nov 21, 2025

Add documentation and comments to get_datlvls()
NErler
committed
refactoring extract_outcome_data(): added function factor_to_integer() that converts outcome columns to continuous (integer) type columns
NErler
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moved locf part for time-depenent cox models to after the outcome variables are extracted
NErler
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Refactored extract_outcome_data(): added choose_default_model and paste_analysis_type helpers, improved handling of survival and factor variables, and introduced varname_to_modelframe utility funct…
NErler
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update test for extract_outcome_data() since multi-column outcomes in non-survival models now result in an error
NErler
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added tests for the new helper function factor_to_integer()
NErler
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Newly created documentation for internal helper functions
NErler
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Reformatting syntax by Air
NErler
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revert a change in extract_outcome_data(): idSurv() function is needed to get the correct term name for event indicator colums such as status != "censored" (was removed in commit cb787a6cd6)
NErler
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fix in extract_outcome_data: set check.names = FALSE to keep readable column names for event indicators
NErler
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Commits on Nov 23, 2025

Automatic syntax formatting by Air
NErler
committed

Commits on Dec 13, 2025

Commits on Dec 14, 2025